1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattatcagatagcatgctctagttgatgaatatggatgccattactgacctcatgccaaataatcaaatattttctctttccatttttagacatttatgtattacattattgcaattgaattttgtagaagATGCTATTACTTACCTAATCCCTCTCCATACCAAGTTTGGAGTAGGTCATTTGCTTCAGACAACG
species | Zea mays |
transcript | GRMZM2G079538_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|149074999|gb|EE163468.2|EE163468
genomic: CTGCTACATCTGAATGCTCAAATCTGCC--G-AGgtaattatca ... tttgtaga
EST: TTCTTCTCAGCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG ATGCTATTACTTACCTAATCCCTCTCCATACCAAGTTTGGAGTAGGTCATT
genomic: TTCTTCTCAGCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGgtaattatca ... tttgtagaagATGCTATTACTTACCTAATCCCTCTCCATACCAAGTTTGGAGTAGGTCATT
ctttccatttttagacatttatgtattacattattgcaattgaattttgtagaagATGCTATTACTTACCTAATCCCTCTCCATACCAAGTTTGGAGTAGGTCATTTGCTTCAGACAACG
atttttagacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatcagatagcatgctctagttgatgaatatggatgccattactgacctcatgccaaataatcaaatattttctctttccatttttagacatttatgtattacattattgcaattgaattttgtagaagATGCTATTACTTACCTAATCCCTCTCCATACCAAGTTTGGAGTAGGTCATTTGCTTCAGACAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG