1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgcactcactcaatgttgttatgtacaaattcaagcgcatcagatttgttacttttataacacgccaacacgcataaccccgtggctacttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGGGAGAAGTTAGTGATGACAATTCCAACCTGTCCTTTCTAAAAAGAATCGC
species | Zea mays |
transcript | GRMZM2G079236_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCG CCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGGEST: gi|211428869|gb|FL284136.1|FL284136
genomic: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCGgtaagagatc ... ttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGG
EST: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCG CCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAATCATGGEST: gi|89250676|gb|DY622462.1|DY622462
genomic: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCGgtaagagatc ... ttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGG
EST: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCG CCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGGEST: gi|149008859|gb|EE041074.2|EE041074
genomic: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCGgtaagagatc ... ttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGG
EST: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCG CCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGG
genomic: GCGTCGTCGCGGAGTAGTCGGAGCCGTTTCTGCTGCCCCCCTCCTTCCCGgtaagagatc ... ttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGG
tttgttacttttataacacgccaacacgcataaccccgtggctacttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGGGAGAAGTTAGTGATGACAATTCCAACCTGTCCTTTCTAAAAAGAATCGC
ctactttt CT-rich tract
tacttttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcactcactcaatgttgttatgtacaaattcaagcgcatcagatttgttacttttataacacgccaacacgcataaccccgtggctacttttatgcagCCAAGTTTGTCAAGTTACGTCCGATGCTCCAGACATAGTAGAAAACCATGGGAGAAGTTAGTGATGACAATTCCAACCTGTCCTTTCTAAAAAGAATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA