1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagaatatatgtataatattgtgatataaaacctgcaccatacctgttaattaatcgacgtcatgttgttcactagagatctgttttcttcggtctgcagCAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCTATTGCTGCAACAAGTCGGGGCTGGACCGTTCCAAAGTAAATGTAAATGG
species | Zea mays |
transcript | GRMZM2G079117_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATATGGTTGTGTTGGCTTCAATACCGAGGAGATATCTAATGCACCTGTG CAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCTEST: gi|71441690|gb|DR831406.1|DR831406
genomic: GATATGGTTGTGTTGGCTTCAATACCGAGGAGATATCTAATGCACATGTGgtatgttctt ... cggtctgcagCAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCT
EST: GATATGGTTGTGTTGGCTTCAATACCGAGGAGATATCTAATGCACCTGTG CAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCT
genomic: GATATGGTTGTGTTGGCTTCAATACCGAGGAGATATCTAATGCACATGTGgtatgttctt ... cggtctgcagCAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCT
gttaattaatcgacgtcatgttgttcactagagatctgttttcttcggtctgcagCAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCTATTGCTGCAACAAGTCGGGGCTGGACCGTTCCAAAGTAAATGTAAATGG
aattaat putative branch site (score: 110)
tctgttttcttc putative PPT
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaatatatgtataatattgtgatataaaacctgcaccatacctgttaattaatcgacgtcatgttgttcactagagatctgttttcttcggtctgcagCAAACCATTCGGTGGAGACCTTGGAGAAGGGTTTACTCACTCAGTTTGTCTATTGCTGCAACAAGTCGGGGCTGGACCGTTCCAAAGTAAATGTAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - atatgta
- - - - - - - - - - - - - - - - ctgcacc
- - - - - - - - - - - - - - - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt