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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcctccgcctgcatttgtttcttgcgccactcgggccgcctgagcctccttgtacgtctttcttaacggcatgccgccgtactgattcgcgtgattgccctaccccccagGGAGAGGGAGTACAGGGTCGCCATCAAGTTCGCCGCGCGCGCCGACCTCCACCACCTCAGGCAGTTCATCGCCGGGCGGCAGGCGGACGCGCCGCAGGAG

Basic information

species Zea mays
transcript GRMZM2G079080_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079080_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 2
gtacgtgcctccgcctgcatttgtttcttgcgccactcgggccgcctgagcctccttgtacgtctttcttaacggcatgccgccgtactgattcgcgtgattgccctaccccccagGGAGAGGGAGTACAGGGTCGCCATCAAGTTCGCCGCGCGCGCCGACCTCCACCACCTCAGGCAGTTCATCGCCGGGCGGCAGGCGGACGCGCCGCAGGAG
                            |||||   |       ||  ||||      | | |  ||||    | |||| |       | || |||||   ||     | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
---------------------------gtgcgcgcattatttgcccacagcccggcgctccattcttctccg-gccatgtcttaaccgtcat-cgcgtctctg----gctccgcagGGAGAGGGAGTACAGGGTCGCCATCAAGTTCGCCGCGCGCGCCGACCTCCACCACCTCCGGCAGTTCATCGCCGGGCGCCAGGCCGACGCGCCGCAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttcttaacggcatgccgccgtactgattcgcgtgattgccctaccccccagGGAGAGGGAGTACAGGGTCGCCATCAAGTTCGCCGCGCGCGCCGACCTCCACCACCTCAGGCAGTTCATCGCCGGGCGGCAGGCGGACGCGCCGCAGGAG
                        tactgat  putative branch site (score: 2)
                                       ttgccctacccccc  putative PPT