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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattattcttaaactaatggcatacaggtacattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG

Basic information

species Zea mays
transcript GRMZM2G078663_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078663_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
gtatgtattattcttaaactaatggcatacaggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
||| |||||  | |  ||| |||| ||| |   |      | |||||   ||| |  | | | | |  |||    |||      | ||||   |||| ||||||||||| |||||||| || ||| | |||||||||||||||||||||||  | ||||| |||
gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG

upper sequence: GRMZM2G078663_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 8
--gtatgtattattct--taaacta---atggcatacaggtacattt-tagctgcagcttcaataatttattggcccttttatgtgtaaaata---acagCTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
   | | ||| | ||   |||| |    |||   |  |  |  |||  |||    |    |||||  || ||  |    | || |  |         ||||||||||| ||||| || ||||| |||||| | |||||||||||||| ||  |||| |  |||   |||
gtatgtctataaatccagtaaattttccatgttctttaaatgtattaatagaatgattgacaatatgttcttaactgaataatattcattgcttctgcagCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG

upper sequence: GRMZM2G078663_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 8
gtatgtattattcttaaactaatggcatacaggtacattttagctgca--gcttcaataatttattggcccttttatg-tgtaaaata------------acagCTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
    ||||   | | || | | |         ||    ||||  || |  | |  ||| ||| |       || |    || | ||||             ||||||||||| ||||| || |||||||||||| | |||||||||||||| || ||||| |  |||   |||
----gtatgtctataaatccagtaaatgttccgtgttctttaaatgtattgatagaatgattgacaatatgttctgcactgaataatattcgttgcttctgcagCTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166625027|gb|EG168088.1|EG168088
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTG
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
                                   ttttatgtgtaaaata  TA-rich tract