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...gcttgtggctgttgttcatacttcatacttgaaagcaggcaacagtttactcagtatgcctatactaagcaactactattgtttcccttctccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTGCTGAGAAGGATATGCTTCATGAAATGGTGAAGATAGCTAAGAAGAAG
species | Zea mays |
transcript | GRMZM2G077844_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|211469270|gb|FL411606.1|FL411606
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|211030018|gb|FL411237.1|FL411237
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATEST: gi|78103934|gb|DV522352.1|DV522352
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCAT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|78118618|gb|DV537002.1|DV537002
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|149083221|gb|EE172499.2|EE172499
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|32868858|gb|CF008540.1|CF008540
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|211139498|gb|FL390012.1|FL390012
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTEST: gi|8368846|gb|BE051791.1|BE051791
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
EST: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACG TTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
genomic: AGAAACGGATTGCACACAAGAACTCAAAGGTCCAGCTTCTTGCATTAACGgtaaatacca ... tccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTT
tttactcagtatgcctatactaagcaactactattgtttcccttctccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTGCTGAGAAGGATATGCTTCATGAAATGGTGAAGATAGCTAAGAAGAAG
ctactattgtttccct CT-rich tract
tatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgtggctgttgttcatacttcatacttgaaagcaggcaacagtttactcagtatgcctatactaagcaactactattgtttcccttctccttttcagTTGCTGGAGACCTTGATTAAAAATTGTGGTGATTTTGTTCATATGCAAGTTGCTGAGAAGGATATGCTTCATGAAATGGTGAAGATAGCTAAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
gcttgtg
- - - -gctgttg
- - - - - - - - - - - - - - - - - gcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaac