1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccatccgaccctcaaccctttttcctcaacttgtcaaccgccgccccatctactcactccaccacggtcatcattaacatttcttctccattcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACGCATAGGTCCACCATGGATGGCGTCTACCACCATCACCACCACCAAGAG
species | Zea mays |
transcript | GRMZM2G077607_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCCTCCACCGCTGCCACCGGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71766162|gb|DR964099.1|DR964099
genomic: CCGCCTCCACCGCTGCCACC-GGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149001201|gb|EE038471.2|EE038471
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|91055118|gb|EB165536.1|EB165536
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148939787|gb|EC884487.2|EC884487
genomic: GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CGCTGCCACCGGCAGCCACCACCCCGCCCCACCACCACAG GACCGTGGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|78080307|gb|DV508719.1|DV508719
genomic: CGCTGCCACCGGCAGCCACCA-CCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCTCCGGACAAGACEST: gi|148956370|gb|EC902184.2|EC902184
genomic: GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCCACCACCACAG GGCCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149104291|gb|EE289730.2|EE289730
genomic: CCGCCTCCACCGCTGCCACCGGCAGCCACCACCCG-CCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71775438|gb|DR973316.1|DR973316
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|78110504|gb|DV528914.1|DV528914
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149101066|gb|EE187165.2|EE187165
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|76281284|gb|DV020852.1|DV020852
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|93283758|gb|EB676022.1|EB676022
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: AGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149080427|gb|EE169450.2|EE169450
genomic: AGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149110620|gb|EE294219.2|EE294219
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71440678|gb|DR821728.1|DR821728
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71317318|gb|DR795348.1|DR795348
genomic: CCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71760606|gb|DR958543.1|DR958543
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148928285|gb|EE284886.2|EE284886
genomic: CCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149102953|gb|EE288307.2|EE288307
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71433799|gb|DR814849.1|DR814849
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148945559|gb|EC890812.2|EC890812
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148987354|gb|EE031196.2|EE031196
genomic: CGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|101402571|gb|EB822834.1|EB822834
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCTTCCACCGCTGCCACCGGCAGCGACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|14244188|gb|BG842258.2|BG842258
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|91878131|gb|EB408088.1|EB408088
genomic: CCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|101395953|gb|EB819903.1|EB819903
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149021603|gb|EE154455.2|EE154455
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|71756828|gb|DR954765.1|DR954765
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CACCACCCGCCCCACCACCACAG GGCCGTCGAGGATCGATCAGGC-GGCAGAAAGCGGTCGTCGCCGGACAAGAEST: gi|149103379|gb|EE288765.2|EE288765
genomic: CACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAG-AAGCGGTCGTCGCCGGACAAGA
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149106408|gb|EE292135.2|EE292135
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148953834|gb|EC899210.2|EC899210
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATTGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149058026|gb|EE156710.2|EE156710
genomic: CGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148933726|gb|EC877642.2|EC877642
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CGCCTCCACCGTTGCCCACCGGCAGCCACCACCCGCCCCACCACCACAAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGGGGTCGTCGCCGGACAAGAEST: gi|148961303|gb|EE012028.2|EE012028
genomic: CGCCTCCACCGCTG-CCACCGGCAGCCACCACCCGCCCCACCACCAC-AGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGA
EST: CCGCCTCCACCGCTGCCACGGGCAGCCACCACCCGCCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148958433|gb|EC904667.2|EC904667
genomic: CCGCCTCCACCGCTGCCACCGGCAGCCACCACCCG-CCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|76282270|gb|DV021838.1|DV021838
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|149073840|gb|EE162161.2|EE162161
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148997313|gb|EE035808.2|EE035808
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: TCCGCCTCCCCCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|148995104|gb|EE034396.2|EE034396
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: ACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACEST: gi|91874845|gb|EB404802.1|EB404802
genomic: ACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: CCCCACCACCACAG GGCGGTCGAGGATCGATCAGGGGGGCGGAAGCGGTGGTCGCCGGGACAAGA
genomic: CCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGG-ACAAGA
ccatctactcactccaccacggtcatcattaacatttcttctccattcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACGCATAGGTCCACCATGGATGGCGTCTACCACCATCACCACCACCAAGAG
catttcttctccattc CT-rich tract
attaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatccgaccctcaaccctttttcctcaacttgtcaaccgccgccccatctactcactccaccacggtcatcattaacatttcttctccattcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGACGCATAGGTCCACCATGGATGGCGTCTACCACCATCACCACCACCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA