1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattcatctcttctctttctttgctttttttcccctaaccctagcaaaaacatcgtacattttcattccatttccaagaaccaaagcctccctatcctgctcactttgctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGATTATCACTCCCACAAAGAGGATGGTGCTACCAGGGAAGCTTCCTTACC
species | Zea mays |
transcript | GRMZM2G077222_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGEST: gi|148965553|gb|EE016380.2|EE016380
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGEST: gi|149097295|gb|EE183124.2|EE183124
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGEST: gi|211124362|gb|FL103657.1|FL103657
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGEST: gi|160481419|gb|EY254533.1|EY254533
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGEST: gi|149074912|gb|EE163360.2|EE163360
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGEST: gi|31354137|gb|CD438494.1|CD438494
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
EST: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTG GAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
genomic: CATTACCTTTGCTGCCGTCTCTATCAGAAGCAGTGGCACCCACGCAGCTGgtattcatct ... ctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTG
cattccatttccaagaaccaaagcctccctatcctgctcactttgctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGATTATCACTCCCACAAAGAGGATGGTGCTACCAGGGAAGCTTCCTTACC
tgctcac putative branch site (score: 2)
ctttgctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatctcttctctttctttgctttttttcccctaaccctagcaaaaacatcgtacattttcattccatttccaagaaccaaagcctccctatcctgctcactttgctctatgcagGAAAATTGCAAAACTTGCCTACAGAGACTGCTGCCACGGAATCTTACCCTGATTATCACTCCCACAAAGAGGATGGTGCTACCAGGGAAGCTTCCTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG