1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaggtttcactcgattggctcttagtttttgctgctcgatcggctcgattgatgtgcggttttctcggtgatttatttttgggattggttggtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG
species | Zea mays |
transcript | GRMZM2G076826_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211509914|gb|FL437411.1|FL437411
genomic: AGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: ACGCGGTTCGATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|71441162|gb|DR822212.1|DR822212
genomic: ACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211192317|gb|FL065114.1|FL065114
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|71434664|gb|DR815714.1|DR815714
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211194714|gb|FL065125.1|FL065125
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211192306|gb|FL065103.1|FL065103
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|32914236|gb|CF019048.1|CF019048
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCEST: gi|211194707|gb|FL065118.1|FL065118
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
gattgatgtgcggttttctcggtgatttatttttgggattggttggtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG
gattgat putative branch site (score: 4)
tgatttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtttcactcgattggctcttagtttttgctgctcgatcggctcgattgatgtgcggttttctcggtgatttatttttgggattggttggtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA