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...gcagagttgatcaccaaatattcacctcttattacgcagctaactaaatgtgatgatgcttctacacctgctgagggtacctttcttaattgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGGGAAGCAAGAGGAAGATGACTTCTTCACATCTGAAGAGAATGTGCAACG
species | Zea mays |
transcript | GRMZM2G075551_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|211069021|gb|FL413437.1|FL413437
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|211431309|gb|FL387541.1|FL387541
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCEST: gi|71422270|gb|DR805672.1|DR805672
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGC
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|74234698|gb|DT642612.1|DT642612
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|74244524|gb|DT652438.1|DT652438
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|71324316|gb|DR798859.1|DR798859
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|211426224|gb|FL393456.1|FL393456
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: CAGAAGATGGGCTGGAAGAACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCEST: gi|93281364|gb|EB673628.1|EB673628
genomic: CAGAAGATGGGCTGGAAGA-CCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCC
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|211013868|gb|FL375768.1|FL375768
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACEST: gi|91879045|gb|EB409002.1|EB409002
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGAC
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|211212015|gb|FL385212.1|FL385212
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCEST: gi|76290174|gb|DV029742.1|DV029742
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGC
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|71433465|gb|DR814515.1|DR814515
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|76283408|gb|DV022976.1|DV022976
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|211030009|gb|FL411228.1|FL411228
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGEST: gi|89761563|gb|DY689524.1|DY689524
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
EST: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAG GTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
genomic: GCAGAAGATGGGCTGGAAGACCGGCAAGGGGCTCGGCAAGAACGAGCAAGgtatcttcct ... tgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTG
aaatgtgatgatgcttctacacctgctgagggtacctttcttaattgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGGGAAGCAAGAGGAAGATGACTTCTTCACATCTGAAGAGAATGTGCAACG
tttcttaattgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagagttgatcaccaaatattcacctcttattacgcagctaactaaatgtgatgatgcttctacacctgctgagggtacctttcttaattgttatgcagGTATACTAGAGCCAATAAGAGCTGACATGAGAGATGCAAAATTAGGTGTTGGGAAGCAAGAGGAAGATGACTTCTTCACATCTGAAGAGAATGTGCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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