1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacacagttaccagagctctgtacattgacagatcatgatgttcatcgtttcttacttagtggaatttctccatgaatcactgacaaacaattttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGAG
species | Zea mays |
transcript | GRMZM2G075336_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGACCTTTCGTACTTGGGTGGTTCTTGGAGCCGTACTATTGGTTCAGCT GGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGAEST: gi|32838902|gb|CD978583.1|CD978583
genomic: GTGACCTTTCGTACTTGGGTGGTTCTTGGAGCCGTACTATTGGTTCAGCTgtaagttccc ... attttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGA
EST: TACTATTGGTTCAGCT GGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGAEST: gi|32924131|gb|CF028943.1|CF028943
genomic: TACTATTGGTTCAGCTgtaagttccc ... attttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGA
EST: ACTATTGGTTCAGCT GGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGAEST: gi|149026922|gb|EE046274.2|EE046274
genomic: ACTATTGGTTCAGCTgtaagttccc ... attttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGA
EST: GTGACCTTTCGTACTTGGGTGGTTCTTGGAGCCGTACTATTGGTTCAGCT GGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGA
genomic: GTGACCTTTCGTACTTGGGTGGTTCTTGGAGCCGTACTATTGGTTCAGCTgtaagttccc ... attttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGA
tcgtttcttacttagtggaatttctccatgaatcactgacaaacaattttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGAG
cactgac putative branch site (score: 2)
ttttctc putative PPT
aaacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacagttaccagagctctgtacattgacagatcatgatgttcatcgtttcttacttagtggaatttctccatgaatcactgacaaacaattttctcagGGGGATGTTCCACTGCAAGGCGACTTCTCTGCTGAGCACATGATTTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG