1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGTGAACACGTCGGCCTACTGGTTCAACAACTCGCAAGAGCTAATCGACTT
species | Zea mays |
transcript | GRMZM2G075153_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|30705385|gb|CD058765.1|CD058765
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|149074757|gb|EE163186.2|EE163186
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|211223662|gb|FL398674.1|FL398674
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|148948278|gb|EC893795.2|EC893795
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|89758469|gb|DY687640.1|DY687640
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|76284198|gb|DV023766.1|DV023766
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|149108488|gb|EE189677.2|EE189677
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|91873684|gb|EB403641.1|EB403641
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATACCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
tttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGTGAACACGTCGGCCTACTGGTTCAACAACTCGCAAGAGCTAATCGACTT
ttttgat putative branch site (score: 4)
ctgcctttttatct putative PPT
tttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGTGAACACGTCGGCCTACTGGTTCAACAACTCGCAAGAGCTAATCGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT