1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGTGAACACGTCGGCCTACTGGTTCAACAACTCGCAAGAGCTAATCGACTT
species | Zea mays |
transcript | GRMZM2G075153_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGEST: gi|76284198|gb|DV023766.1|DV023766
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
tttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGTGAACACGTCGGCCTACTGGTTCAACAACTCGCAAGAGCTAATCGACTT
ttttgat putative branch site (score: 137)
ctgcctttttatct putative PPT
tttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAGTGAACACGTCGGCCTACTGGTTCAACAACTCGCAAGAGCTAATCGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT