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gttcgcgctccctgctttgcctctgacaagcggcggtcggtgtggatctagtggaactgctgggccttcccactgaactgagtgagctgcttgcttgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGGACGGGGTCACTGTTGCAAAAAGCGTGGAGTTCGAGGATAGCGCGAAGA
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|71438972|gb|DR820022.1|DR820022
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|211181733|gb|FL012624.1|FL012624
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|28909718|gb|CB331067.1|CB331067
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: ACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|149083932|gb|EE173310.2|EE173310
genomic: ACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|149051769|gb|EE155894.2|EE155894
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|148966460|gb|EE017469.2|EE017469
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|78120143|gb|DV538527.1|DV538527
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|78118616|gb|DV537000.1|DV537000
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|148937683|gb|EC881881.2|EC881881
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|211181732|gb|FL012623.1|FL012623
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|67015320|gb|CO444069.1|CO444069
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|74242338|gb|DT650252.1|DT650252
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|149010196|gb|EE042014.2|EE042014
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGEST: gi|31664231|gb|CD572956.1|CD572956
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: ACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: ACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
gtggaactgctgggccttcccactgaactgagtgagctgcttgcttgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGGACGGGGTCACTGTTGCAAAAAGCGTGGAGTTCGAGGATAGCGCGAAGA
cttgctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcgctccctgctttgcctctgacaagcggcggtcggtgtggatctagtggaactgctgggccttcccactgaactgagtgagctgcttgcttgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAGGACGGGGTCACTGTTGCAAAAAGCGTGGAGTTCGAGGATAGCGCGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA