1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tgcatcagcagactatagttccactcactttgtttctggtttgatctgaaaacaggtaccacctgtgcaactgtgcttacacaggcaattcttactgaagGATGCAAGGCCGTGGCAGCCGGTGTCAACGTTATGGACTTGCGGAATGGTATAAACAAGGCAATAAATGCTATCACTGCTCACCTCAAAAGTAAAGCGTG
species | Zea mays |
transcript | GRMZM2G074790_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATCTGGTGAAGCAAGTTGCTGATGCTACGAACAAAGCTGCAGGGGATG GATGCAAGGCCGTGGCAGCCG-TGTCAACGTTATGGACTTGCGGAATGGTAEST: gi|31358270|gb|CD442627.1|CD442627
genomic: GAATCTGGTGAAGCAAGTTGCTGATGCTACGAACAAAGCTGCAGGGGATGgtgggcacca ... cttactgaagGATGCAAGGCCGTGGCAGCCGGTGTCAACGTTATGGACTTGCGGAATGGTA
EST: GAATCTGGTGAAGCAAGTTGCTGATGCTACGAACAAAGCTGCAGGGGATG GATGCGGGGGCGTGGCAGCCGGTGTCAACGTTATGGACTTGCGGAATGGTA
genomic: GAATCTGGTGAAGCAAGTTGCTGATGCTACGAACAAAGCTGCAGGGGATGgtgggcacca ... cttactgaagGATGCAAGGCCGTGGCAGCCGGTGTCAACGTTATGGACTTGCGGAATGGTA
ctgaaaacaggtaccacctgtgcaactgtgcttacacaggcaattcttactgaagGATGCAAGGCCGTGGCAGCCGGTGTCAACGTTATGGACTTGCGGAATGGTATAAACAAGGCAATAAATGCTATCACTGCTCACCTCAAAAGTAAAGCGTG
ttcttac putative branch site (score: 146)
ttcttact CT-rich tract
aattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatcagcagactatagttccactcactttgtttctggtttgatctgaaaacaggtaccacctgtgcaactgtgcttacacaggcaattcttactgaagGATGCAAGGCCGTGGCAGCCGGTGTCAACGTTATGGACTTGCGGAATGGTATAAACAAGGCAATAAATGCTATCACTGCTCACCTCAAAAGTAAAGCGTG
- - tcagcag
- - - - - - - - - - ccactca
- - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - -tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - aaaacagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - taccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggcaa