1 5' 3' | 2 5' 3' | 3 5' 3' |
...actctcagacacgtaaaaaagtgttgacaagtaaaaaaaaatgaaaggagtattgcaaatgcttgccggtcgctctataataaatatgtgatatgattagATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGA
species | Zea mays |
transcript | GRMZM2G074742_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aggagtattgcaaatgcttgccggtcgctctataataaatatgtgatatgattagATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGA
tataataaatatgtga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctcagacacgtaaaaaagtgttgacaagtaaaaaaaaatgaaaggagtattgcaaatgcttgccggtcgctctataataaatatgtgatatgattagATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - -cagacac
- - - - - - -taaaaaa
- - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc