Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcccttagccttagcatgctgagatttttaaatggctttgtgctattatgtcagcattgcaaagttcactgactattgactgtatgttacatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATA

Basic information

species Zea mays
transcript GRMZM2G074479_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074479_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g07240.1 (Oryza sativa), 3'ss of exon 2
tttcccttagccttagcatgctgagattttt---aaatggctttgtgctattatgtcagcattgcaaagttcactgactattgactgtatgttacatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATA
   |     |  | | ||||||   | ||||   |  |  |  | ||| |  |||  | | |||  ||||  ||| ||  || ||| |       || |||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||||||| || |||||||
ccacataatgattaatcatgcttcaactttttgtagctaccagtctgccagcatggtaac-ttgagaagtcgactaacagttaactctta--cgtatctgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211348201|gb|FL266286.1|FL266286
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|149070744|gb|EE159156.2|EE159156
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|18964126|gb|BM660824.1|BM660824
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGC
EST: gi|211046084|gb|FL310642.1|FL310642
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348190|gb|FL266275.1|FL266275
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211352999|gb|FL266303.1|FL266303
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|15199109|gb|BI423661.1|BI423661
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350588|gb|FL266287.1|FL266287
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|14245034|gb|BG873616.1|BG873616
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|50325760|gb|CO520886.1|CO520886
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|18964589|gb|BM661093.1|BM661093
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTAC
EST: gi|211350599|gb|FL266298.1|FL266298
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350590|gb|FL266289.1|FL266289
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211345794|gb|FL266267.1|FL266267
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|19351561|gb|BM896093.1|BM896093
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348200|gb|FL266285.1|FL266285
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211149658|gb|FL454004.1|FL454004
EST:     SCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350592|gb|FL266291.1|FL266291
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|148982087|gb|EE028135.2|EE028135
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|20802328|gb|BQ293378.1|BQ293378
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|71450071|gb|DR831121.1|DR831121
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|40334926|gb|CK368996.1|CK368996
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|71596000|gb|DR906751.1|DR906751
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348198|gb|FL266283.1|FL266283
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|76015317|gb|DT942487.1|DT942487
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|5895829|gb|AW037075.1|AW037075
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211352998|gb|FL266302.1|FL266302
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACWAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|14244569|gb|BG840702.2|BG840702
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211353001|gb|FL266305.1|FL266305
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|40485949|gb|CK394820.1|CK394820
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|6918701|gb|AW400231.1|AW400231
EST:     GCCGGATGATACGCCGNGGGACGGNG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|88753208|gb|DY537349.1|DY537349
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350602|gb|FL266301.1|FL266301
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACMTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|60394873|gb|DN227742.1|DN227742
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|18964591|gb|BM661094.1|BM661094
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCA
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCA
EST: gi|161593037|gb|EY963949.1|EY963949
EST:     CGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: CGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|18964127|gb|BM660825.1|BM660825
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCA
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCA
EST: gi|211353009|gb|FL266313.1|FL266313
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|71321510|gb|DR797454.1|DR797454
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|149011819|gb|EE042419.2|EE042419
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|32913763|gb|CF018575.1|CF018575
EST:     GCCCGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|6952380|gb|AW424448.1|AW424448
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348187|gb|FL266272.1|FL266272
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|166601500|gb|EG166657.1|EG166657
EST:     CCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAAACAAGCCA
genomic: CCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAA-CAAGCCA
EST: gi|74231852|gb|DT639766.1|DT639766
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|50338419|gb|CO533545.1|CO533545
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350589|gb|FL266288.1|FL266288
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGGCCA
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAG-CCA
EST: gi|149031381|gb|EE286347.2|EE286347
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|5871231|gb|AW017702.1|AW017702
EST:     CGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: CGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|74034816|gb|DT535307.1|DT535307
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350601|gb|FL266300.1|FL266300
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|18963708|gb|BM660586.1|BM660586
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348188|gb|FL266273.1|FL266273
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211345797|gb|FL266270.1|FL266270
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|14206804|gb|BG840482.1|BG840482
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|19351464|gb|BM895996.1|BM895996
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|5901161|gb|AW042261.1|AW042261
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348189|gb|FL266274.1|FL266274
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|74242991|gb|DT650905.1|DT650905
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|20300365|gb|BQ163308.1|BQ163308
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|20208071|gb|BQ134160.1|BQ134160
EST:     TCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|91871332|gb|EB401363.1|EB401363
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348193|gb|FL266278.1|FL266278
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211353007|gb|FL266311.1|FL266311
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350600|gb|FL266299.1|FL266299
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211353006|gb|FL266310.1|FL266310
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211350594|gb|FL266293.1|FL266293
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|60350120|gb|DN217093.1|DN217093
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|149051786|gb|EE155911.2|EE155911
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|71422491|gb|DR805749.1|DR805749
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211353005|gb|FL266309.1|FL266309
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348199|gb|FL266284.1|FL266284
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|149070743|gb|EE159155.2|EE159155
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|71425366|gb|DR806630.1|DR806630
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211345795|gb|FL266268.1|FL266268
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|50338420|gb|CO533546.1|CO533546
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|17932567|gb|BM269527.1|BM269527
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|18649673|gb|BM498492.1|BM498492
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211345793|gb|FL266266.1|FL266266
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|76015316|gb|DT942486.1|DT942486
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAACCAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|71766464|gb|DR964401.1|DR964401
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|67021052|gb|CO449801.1|CO449801
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|60396891|gb|DN229710.1|DN229710
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|148990667|gb|EE032063.2|EE032063
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|101386069|gb|EB815078.1|EB815078
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|149095951|gb|EE181617.2|EE181617
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|120481308|gb|EH211253.1|EH211253
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|6859860|gb|AW355854.1|AW355854
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|211348196|gb|FL266281.1|FL266281
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|32851115|gb|CD990796.1|CD990796
EST:     GCCCGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|87153387|gb|DY398176.1|DY398176
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|6020886|gb|AW065814.1|AW065814
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|78109847|gb|DV528263.1|DV528263
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|22472512|gb|BU036992.1|BU036992
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
EST: gi|78179620|gb|DV549993.1|DV549993
EST:     GCCGGATGATACGCCGTGGGACGGTG                         GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC
genomic: GCCGGATGATACGCCGTGGGACGGTGgtgagattcc ... acatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatgtcagcattgcaaagttcactgactattgactgtatgttacatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATA
                              tattgac  putative branch site (score: 2)
                                           ttacatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcccttagccttagcatgctgagatttttaaatggctttgtgctattatgtcagcattgcaaagttcactgactattgactgtatgttacatatgtagGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG