1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgaacttttattacgtcatgctaaagacttgttacttctcaactgattaataatgtacctagttttatcaaagtaactgaaacatgtctttttcgaagTTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTAAAGTTGACAAAGAAAAGTTGATTGCTGGTACACGAGTTGTTCTTGACAT
species | Zea mays |
transcript | GRMZM2G074037_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGTCAAATTATCGGTGAAGTGCTTCGACCTTTGGACAAGGAACGAT TTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTAEST: gi|211075772|gb|FL462562.1|FL462562
genomic: TGTTGGTCAAATTATCGGTGAAGTGCTTCGACCTTTGGACAAGGAACGATgtaagtaaaa ... tttttcgaagTTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTA
EST: TGTTGGTCAAATTATCGGTGAAGTGCTTCGACCTTTGGACAAGGAACGAT TTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTA
genomic: TGTTGGTCAAATTATCGGTGAAGTGCTTCGACCTTTGGACAAGGAACGATgtaagtaaaa ... tttttcgaagTTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTA
tgattaataatgtacctagttttatcaaagtaactgaaacatgtctttttcgaagTTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTAAAGTTGACAAAGAAAAGTTGATTGCTGGTACACGAGTTGTTCTTGACAT
aagtaac putative branch site (score: 295)
tgtctttttc putative PPT
ttttatcaaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgaacttttattacgtcatgctaaagacttgttacttctcaactgattaataatgtacctagttttatcaaagtaactgaaacatgtctttttcgaagTTATTGTCAAGGCTAGCAGCGGACCACGTTATGTTGTTGCCTGCCGAAGTAAAGTTGACAAAGAAAAGTTGATTGCTGGTACACGAGTTGTTCTTGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
catgaac
- - - - - - - - gtcatgc
- - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - -actgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgaa