1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtgttgtcttattaaaaataatgtaaccttcaatttatcacaattctaactgttggtggttgtttcatctgcagtctttctgtagcatttctctatcatagtctgtcaaagtagattataaaccttctgatttgtattgtgatgcacattgcacttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGCAGT
species | Zea mays |
transcript | GRMZM2G073498_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAAGATYATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTEST: gi|211220862|gb|FL004699.1|FL004699
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGT
EST: TCGAAGAY-ATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTTGCTTGGTATCCEST: gi|211220863|gb|FL004700.1|FL004700
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCC
EST: CGAAGATCATTGAAGTTGACAACAGTGTNGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTTGCTTGGTATCTTGATTGCTATTGGGGAAGCTGTEST: gi|211222921|gb|FL004706.1|FL004706
genomic: CGAAGATCATTGAAGTTGACAACAGTGT-GAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGT
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTTGCTTGGTATEST: gi|211220860|gb|FL004697.1|FL004697
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTAT
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAAGATCGTGCTCTGCT GAATGGTGCACAAAAGTTGCTTGGTATCCTGATTTGCTAT-GGGGAAGCTGEST: gi|211220857|gb|FL004694.1|FL004694
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATT-GCTATTGGGGAAGCTG
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTTCGCTTGGTATCCTGATTGCTATTGGGGAAGCTGEST: gi|211218788|gb|FL004680.1|FL004680
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTT-GCTTGGTATCCTGATTGCTATTGGGGAAGCTG
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTEST: gi|211220855|gb|FL004692.1|FL004692
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGT
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGTEST: gi|211220858|gb|FL004695.1|FL004695
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGT
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGGTGCACAAAAATTGCTTGGTATCEST: gi|211222925|gb|FL004710.1|FL004710
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATC
EST: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT GAATGTTGCACAAAAGTTGCTTGGGATCCTGATTGCTAT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTAT
tagattataaaccttctgatttgtattgtgatgcacattgcacttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGCAGT
ttctgat putative branch site (score: 3)
cttctttactc putative PPT
atttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttgtcttattaaaaataatgtaaccttcaatttatcacaattctaactgttggtggttgtttcatctgcagtctttctgtagcatttctctatcatagtctgtcaaagtagattataaaccttctgatttgtattgtgatgcacattgcacttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCCTGATTGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG