1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcatcttggacttaatccttttattgatgtgctgttctgttgcacttaaagcttataataagaattctttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGTGCTGAATTTGAAGGGGCTGTCATTGCACTGTTTCATCTGTTGATT
species | Zea mays |
transcript | GRMZM2G073498_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32849693|gb|CD989374.1|CD989374
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32938027|gb|CF042846.1|CF042846
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|6021123|gb|AW066051.1|AW066051
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32836577|gb|CD976255.1|CD976255
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32793445|gb|CD945681.1|CD945681
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|31354034|gb|CD438391.1|CD438391
genomic: GATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32932204|gb|CF037016.1|CF037016
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32838942|gb|CD978623.1|CD978623
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32827818|gb|CD967496.1|CD967496
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GATCTAGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|32934776|gb|CF039588.1|CF039588
genomic: GATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGEST: gi|148953951|gb|EC899337.2|EC899337
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTG CGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct ... tttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
attgatgtgctgttctgttgcacttaaagcttataataagaattctttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGTGCTGAATTTGAAGGGGCTGTCATTGCACTGTTTCATCTGTTGATT
tattgat putative branch site (score: 878)
ttctttcat putative PPT
ttaaagcttataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatcttggacttaatccttttattgatgtgctgttctgttgcacttaaagcttataataagaattctttcatgtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGTGCTGAATTTGAAGGGGCTGTCATTGCACTGTTTCATCTGTTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG