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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtactctcttgtccagtgtacccaataggcccctgcgttccatacatgatgcttgaagaccataccgtgtccagtggcaaagttgccaggcaaggagattatttcacatggttggattctcaacctgtgaactcagttttgtatgtctcccttggcagTTTTGTTTCAGTCTCAGCCTCTCAACTTGAAGAGATCGCATTGGGCCTAATAGCCAGTGAGGTCAGGTTCTTGTGGATTCTTCGAGAACAATCCCCTCGG

Basic information

species Zea mays
transcript GRMZM2G073376_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89252894|gb|DY624680.1|DY624680
EST:     CTTTTCACCACCATGTATGAGCTTGAGGCCAGTGTCATTGACTCGCTAAG                         TTTTGTTTCAGTCTCAGCCTCTCAACTTGAAGAGATCGCATTGGGCCTAAT
genomic: CTTTTCACCACCATGTATGAGCTTGAGGCCAGTGTCATTGACTCGCTAAGgtcagtactc ... cccttggcagTTTTGTTTCAGTCTCAGCCTCTCAACTTGAAGAGATCGCATTGGGCCTAAT
EST: gi|89252846|gb|DY624632.1|DY624632
EST:     CTTTTCACCACCATGTATGAGCTTGAGGCCAGTGTCATTGACTCGCTAAG                         TTTTGTTTCAGTCTCAGCCTCTCAACTTGAAGAGATCGCATTGGGCCTAAT
genomic: CTTTTCACCACCATGTATGAGCTTGAGGCCAGTGTCATTGACTCGCTAAGgtcagtactc ... cccttggcagTTTTGTTTCAGTCTCAGCCTCTCAACTTGAAGAGATCGCATTGGGCCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacatggttggattctcaacctgtgaactcagttttgtatgtctcccttggcagTTTTGTTTCAGTCTCAGCCTCTCAACTTGAAGAGATCGCATTGGGCCTAATAGCCAGTGAGGTCAGGTTCTTGTGGATTCTTCGAGAACAATCCCCTCGG
                                        tgtctccctt  CT-rich tract
                                 ttttgtat  TA-rich tract