Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211068817|gb|FK951859.1|FK951859EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST:
gi|89759041|gb|DY687990.1|DY687990EST: CCGCCGCCGTACGACAAGACCAAGCTCCTGGTCATCCCTGACGCTCTTAA AGTCCTGAGGCTGC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGC
EST:
gi|211077038|gb|FK951906.1|FK951906EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GATCCTGAGGCTGCAACCTGGACACAAGTACT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACT
EST:
gi|14529422|gb|BI096555.1|BI096555EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST:
gi|9566387|gb|BE475896.1|BE475896EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGGCCTGAGGCTGCAACCTGGACACAAGTAC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTAC
EST:
gi|9731552|gb|BE510304.1|BE510304EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTCCTGAGGCTGCAACCTGGACACAAGTACT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACT
EST:
gi|211518733|gb|FK951840.1|FK951840EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGC
EST:
gi|211074298|gb|FK951895.1|FK951895EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
EST:
gi|211071560|gb|FK951881.1|FK951881EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTTCTGAGGCT
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCT
EST:
gi|211071564|gb|FK951885.1|FK951885EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTTCTGAGGCTGCAACC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACC
EST:
gi|91048018|gb|EB158436.1|EB158436EST: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAA GGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
genomic: CCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 2 RNA-Seq libraries.
Block sizes:
42 (upstream exon),
8 (downstream exon)
Score:
7CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGGGTGAGTGTTTCC
Block sizes:
28 (upstream exon),
25 (downstream exon)
Score:
3CCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAAGACGTACGAGGGCGTCCCGCCGCCGTACGACAAGACCAAGCGCCTGGTCATCCCTGACGCTCTTAAgtacgtgtct ... tggtccgtagGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGGGTGAGTGTTTCC
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