1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagagacatgtacctcactgtatgcttggctacttgaatgttagtatggagttggtcaccggccctgtcagttaatacattaaccattccatatgctgtacccttgctactaattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGGATTGCATGTTTTTGCGCACAACATTGAAACTGTGGAAGAGCTTCAAAG
species | Zea mays |
transcript | GRMZM2G071714_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|149103480|gb|EE288873.2|EE288873
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGEST: gi|149083380|gb|EE172687.2|EE172687
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCACTTG TACCTGATTTCCGTGGAGATCCGAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|74244797|gb|DT652711.1|DT652711
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|76011109|gb|DT938279.1|DT938279
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|149110556|gb|EE190481.2|EE190481
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|93281869|gb|EB674133.1|EB674133
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TATCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|93281868|gb|EB674132.1|EB674132
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TATCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|71313819|gb|DR793500.1|DR793500
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGTTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|78113555|gb|DV531946.1|DV531946
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|74244796|gb|DT652710.1|DT652710
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|71313820|gb|DR793501.1|DR793501
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGEST: gi|91875685|gb|EB405642.1|EB405642
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAGGGTTGCGACTTCTGEST: gi|71300477|gb|DR786296.1|DR786296
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTTCGTGGAGATCCAAGCTGCGTAGAAGA-GGTTGCGACTTCTEST: gi|74244354|gb|DT652268.1|DT652268
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGA-GAAGGTTGCGACTTCT
EST: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTG TACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
genomic: AGTACAGAAGCTAAAGGCTTTGAAGCCAGAAATGCTTATTGAAGCGCTTGgtaagagaca ... aattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTG
gtcagttaatacattaaccattccatatgctgtacccttgctactaattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGGATTGCATGTTTTTGCGCACAACATTGAAACTGTGGAAGAGCTTCAAAG
tactaat putative branch site (score: 113)
ttaatacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagacatgtacctcactgtatgcttggctacttgaatgttagtatggagttggtcaccggccctgtcagttaatacattaaccattccatatgctgtacccttgctactaattttgcagTACCTGATTTCCGTGGAGATCCAAGCTGCGTAGAGAAGGTTGCGACTTCTGGATTGCATGTTTTTGCGCACAACATTGAAACTGTGGAAGAGCTTCAAAG
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