Sequence
atgc intronic sequence ATGC exonic sequencegcatgccttttcttcgacaaatcagttaactattcaatagattgtttgttcttgactacatttcgcttatcgccgacgaatcctttttttttcttcctttacttctgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGGGCGGCGGAGGGTATGGGAAAGGTAACGATGGGTTCACAAGGTTCGGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G071599_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g36760.1 (Oryza sativa), 3'ss of exon 1
gcatgccttttcttcgacaaatcagttaactattcaatagattgtttgttcttgactacatttcgcttatcgccgacgaatcctttttttttcttcctttacttc------tgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGGGCGGCGGAGGGTATGGGAAAGGTAACGATGGGTTCACAAGGTTCGGGAG
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gcaagacgatctc----caaatcagtca----ctcgattga--gctccatcttgctcacattccacttatttctgacaaattatctgttgcatgcaactgaaatcgacgaatgctgcagGGAAGGTACTGAATTACGGCAAGAACTTGAGGCCGATGGGATGGTCATGGGGCGGAAGCGGGTACAGCAAAGGTAGCAATGGTTTCTCAAGATTCGGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148942965|gb|EC888012.2|EC888012EST: GGCTCCCGTTTGCGAGCCCCCCGAGCCCACCACCAACAGCAGCCTACCAG GGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGG
genomic: GGCTCCCGTTTGCGAGCCCCCCGAGCCCACCACCAACAGCAGCCTACCAGgcatgccttt ... tctgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttcgcttatcgccgacgaatcctttttttttcttcctttacttctgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGGGCGGCGGAGGGTATGGGAAAGGTAACGATGGGTTCACAAGGTTCGGGAG
tcctttttttttcttc CT-rich tract
aatccttttttttt TA-rich tract