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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgccttttcttcgacaaatcagttaactattcaatagattgtttgttcttgactacatttcgcttatcgccgacgaatcctttttttttcttcctttacttctgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGGGCGGCGGAGGGTATGGGAAAGGTAACGATGGGTTCACAAGGTTCGGGAG

Basic information

species Zea mays
transcript GRMZM2G071599_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071599_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g36760.1 (Oryza sativa), 3'ss of exon 1
gcatgccttttcttcgacaaatcagttaactattcaatagattgtttgttcttgactacatttcgcttatcgccgacgaatcctttttttttcttcctttacttc------tgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGGGCGGCGGAGGGTATGGGAAAGGTAACGATGGGTTCACAAGGTTCGGGAG
||| | |  |       ||||||||| |     || || ||  | |   |||||   ||||| | |||||  | ||| |||  | | ||         | |  ||      |||||||||||||||||| | |||| |||||| ||||| ||| ||||||||| ||||||||||  | |||||  | ||||||| | |||| ||| |||| ||||| ||
gcaagacgatctc----caaatcagtca----ctcgattga--gctccatcttgctcacattccacttatttctgacaaattatctgttgcatgcaactgaaatcgacgaatgctgcagGGAAGGTACTGAATTACGGCAAGAACTTGAGGCCGATGGGATGGTCATGGGGCGGAAGCGGGTACAGCAAAGGTAGCAATGGTTTCTCAAGATTCGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148942965|gb|EC888012.2|EC888012
EST:     GGCTCCCGTTTGCGAGCCCCCCGAGCCCACCACCAACAGCAGCCTACCAG                         GGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGG
genomic: GGCTCCCGTTTGCGAGCCCCCCGAGCCCACCACCAACAGCAGCCTACCAGgcatgccttt ... tctgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcgcttatcgccgacgaatcctttttttttcttcctttacttctgctgcagGGAAGGTACTTAGTTACAGCAAGAGCTTGAAGCCCATGGGATGGGCATGGGGCGGCGGAGGGTATGGGAAAGGTAACGATGGGTTCACAAGGTTCGGGAG
                      tcctttttttttcttc  CT-rich tract
                    aatccttttttttt  TA-rich tract