Sequence
atgc intronic sequence ATGC exonic sequencegtcaataactaagtaaattggtttagcctcttatgttgaaaaagattcttgaacttgtaaaatttcaacaactaatcattatatattattcattgattttatttacgatattgatattacaacttacaacaataactgttgatctctagGCTTTTTGTGTCTAAGACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTAGACGATATCAAGGAGTTAAAATGTTCAGAAGATAGACCTATGTTCATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G070276_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g55200.2 (Oryza sativa), 3'ss of exon 3
gtcaataactaagtaaattggttta-gcctcttatgttgaaaaagattcttgaacttgtaaaatttcaaca-actaatcattatatattattcattgattttatttacgatattgatattacaacttacaacaataactgttg-atctctagGCTTTTTGTGTCTAAGACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGT--AGACGATATCAAG---GAGTTAAAATGTTCAGAAGATAGACCTATGTTCATA
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gtcagttaccaaatcaactcccataagcttcttactctga----gcttcttttacctttgaaatttgcatatatccttcatcctctggtctgtattaattt-attaatgctctatatattttaaca-atacctctgacttttacatatccagGCTTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGTGCAGAAGACATCAGGGAAGAGTTGAAATCTAAAGAAGACA-ACCAAGAAC----
upper sequence: GRMZM2G070276_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g01420.3 (Oryza sativa), 3'ss of exon 3
gtcaataactaagtaaattggtttagcctcttatgttgaaaaagattcttgaacttgtaaaatttcaaca-actaatcattatatattattcattgattttatttacgatattgatat---tacaacttacaacaataactgttg-atctctagGCTTTTTGTGTCTAAGACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTAGAC--GATATCAAGGAG---TTAAAATGTTCAGAAGATAGACCTATGTTCATA
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-------------------------gtcagttacgctca----gcttcttttacctttgaaatttgcatatatccttcatcctctgctctgtattaattt-attaatgctctctatatatattttgataatacctctgacttttacatatccagGCCTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGTGCACAAGACATCAGGGAAGAATTGAAATCTAAACAAGACA-ACCAAGAAC---- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattttatttacgatattgatattacaacttacaacaataactgttgatctctagGCTTTTTGTGTCTAAGACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTAGACGATATCAAGGAGTTAAAATGTTCAGAAGATAGACCTATGTTCATA
tctct CT-rich tract
atattgatattacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaataactaagtaaattggtttagcctcttatgttgaaaaagattcttgaacttgtaaaatttcaacaactaatcattatatattattcattgattttatttacgatattgatattacaacttacaacaataactgttgatctctagGCTTTTTGTGTCTAAGACATTGGAAGTGCAAAGTCAAGGCTCACTATGTGTAGACGATATCAAGGAGTTAAAATGTTCAGAAGATAGACCTATGTTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG