Sequence
atgc intronic sequence ATGC exonic sequencegttttatctgttatatttctttacgacttctttcgttatcagatgaacacctggtgcagtccactaactgttgttctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGACAGGAGGGATGCAGAGGATGCTATTCGTGATCTAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G070239_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g54770.1 (Oryza sativa), 3'ss of exon 2
--------gttttatct-gttatatttctt----tacgacttctttcgttatcagatgaacacctggtgcagt--ccactaactgttgttctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGACAGGAGGGATGCAGAGGATGCTATTCGTGATCTAGATG
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tattcctgactcaatatagtggtaccccttgtactataagttatttggacgttgcgggtatgtttgttgatgtaattttcaagtgtatttttccatgcagTGTCTGGGTTGCCCGTAAACCACCTGGTTTTGCATTTATCGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATG
upper sequence: GRMZM2G070239_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G17930.4 (Glycine max), 3'ss of exon 2
--------------gttttatctgttatatttctttacgacttctttcgttatcagatgaacacctggtgcagtccactaactgt-tgttctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGACAGGAGGGATGCAGAGGATGCTATTCGTGATCTAGATG
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gttttgttgctgtgattttattttttgttttgttctactattaggtttattttgaaaaaaaatgattttgtgtttaatgggtactatgttatgtttgcagTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATG
upper sequence: GRMZM2G070239_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA17G29080.2 (Glycine max), 3'ss of exon 2
------------------gttttatctgttatatttctttacgacttctttcgttatcagatgaacacctggtgcagtccactaactgttgttctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGACAGGAGGGATGCAGAGGATGCTATTCGTGATCTAGATG
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cggtttttgttgcagtggtttttatttgttttgtttttctaataggtct---attttttgaaaaaaaaatgattttgtgtttaatgctatgttatgtttgcagTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATCCGTGAATTGGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67031864|gb|CO460613.1|CO460613EST: GATGAAGGTGTGCATGTGTATCTTCATGTTGGATCTAGCGAGATGGAGAG TGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
genomic: GATGAAGGTGTGCATGTGTATCTTCATGTTGGATCTAGCGAGATGGAGAGgttttatctg ... ctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcgttatcagatgaacacctggtgcagtccactaactgttgttctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGACAGGAGGGATGCAGAGGATGCTATTCGTGATCTAGATG
cactaac putative branch site (score: 1)
ttgttctc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttatctgttatatttctttacgacttctttcgttatcagatgaacacctggtgcagtccactaactgttgttctcaatgcagTGTTTGGGTCGCACGCAAACCACCTGGTTTTGCATTTATTGATTTTGACGACAGGAGGGATGCAGAGGATGCTATTCGTGATCTAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG