1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTATGAAGCTACAGAAGATGGATTCTTTTCTGTTGTTACCAAACAATGGCC
species | Zea mays |
transcript | GRMZM2G069970_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTEST: gi|78086197|gb|DV514590.1|DV514590
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTEST: gi|211178849|gb|FL219806.1|FL219806
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGNAAA GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTEST: gi|148970773|gb|EE021521.2|EE021521
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTEST: gi|149085363|gb|EE174870.2|EE174870
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTEST: gi|93283061|gb|EB675325.1|EB675325
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAA GGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGT
ttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTATGAAGCTACAGAAGATGGATTCTTTTCTGTTGTTACCAAACAATGGCC
ttgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatttagGGTTTGCATCTGAGCAGAATACAATGTCTGCTGATGTACTGAAGAAGGCGTATGAAGCTACAGAAGATGGATTCTTTTCTGTTGTTACCAAACAATGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA