1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatccttcattttcctcgtcgtctttgttttttctctcttcattttttggaggaaaattttttgtgcaaagttccacatgtttcctgagctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAGGATATGATAGAAAGGCTCATTGTGGAGTGTGACAGGAAAATTCAGAGG
species | Zea mays |
transcript | GRMZM2G069916_T05 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAAGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|211423515|gb|FL160031.1|FL160031
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|67033512|gb|CO462261.1|CO462261
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|71330193|gb|DR801854.1|DR801854
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|148973852|gb|EE024993.2|EE024993
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|76292705|gb|DV032273.1|DV032273
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|211420922|gb|FL160021.1|FL160021
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGEST: gi|76920400|gb|DV168155.1|DV168155
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAG
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|149014011|gb|EE043527.2|EE043527
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|88756297|gb|DY540438.1|DY540438
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|148952947|gb|EE152420.2|EE152420
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|87157671|gb|DY402460.1|DY402460
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAAGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|211420926|gb|FL160025.1|FL160025
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|9731138|gb|BE509890.1|BE509890
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGCTCTAAGATTCATTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAAGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|148932069|gb|EC875423.2|EC875423
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|211420930|gb|FL160029.1|FL160029
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGGAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|71312972|gb|DR793008.1|DR793008
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|149000973|gb|EE038213.2|EE038213
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|88756334|gb|DY540475.1|DY540475
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAATAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGACAACTCGAEST: gi|211420928|gb|FL160027.1|FL160027
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCGAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|211024315|gb|FL368572.1|FL368572
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAAGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|211142603|gb|FL018649.1|FL018649
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAEST: gi|9952467|gb|BE639050.1|BE639050
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
EST: ATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAGA TTATGAAGAAGCGAAAGCAAAAGGAACAGAAAATTTTGATAGAGAACTCGA
genomic: ATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAGAgtatccttca ... ctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGA
ttttggaggaaaattttttgtgcaaagttccacatgtttcctgagctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAGGATATGATAGAAAGGCTCATTGTGGAGTGTGACAGGAAAATTCAGAGG
ttcctgagc putative branch site
aaaattttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttcattttcctcgtcgtctttgttttttctctcttcattttttggaggaaaattttttgtgcaaagttccacatgtttcctgagctgttggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAAAATTTTGATAGAGAACTCGAGGATATGATAGAAAGGCTCATTGTGGAGTGTGACAGGAAAATTCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG