1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacagattctcaagctgctccgctcgttcgctttagtggcctctaagaatgtagtccgattaattcagtgttactgtggaacagtacaatttgtagttgaaccatttgtctgctcatgctgtgcaaattatttttgatgaaggctgcagtttgactgtactgtatttaacattccatgttaaataatattttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG
species | Zea mays |
transcript | GRMZM2G069765_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCCGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|6021027|gb|AW065955.1|AW065955
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|211229393|gb|FL136781.1|FL136781
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGGGGCCAAG GGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAEST: gi|211229384|gb|FL136772.1|FL136772
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagG-CTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAA
EST: GCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAEST: gi|211229382|gb|FL136770.1|FL136770
genomic: GCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGG-CCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|78083040|gb|DV511433.1|DV511433
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|211231449|gb|FL136785.1|FL136785
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGNCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|211231451|gb|FL136787.1|FL136787
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|211231448|gb|FL136784.1|FL136784
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|211229392|gb|FL136780.1|FL136780
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|31357629|gb|CD441986.1|CD441986
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAGAEST: gi|32865501|gb|CF005183.1|CF005183
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAEST: gi|32908744|gb|CF013557.1|CF013557
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAEST: gi|211229391|gb|FL136779.1|FL136779
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCAAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGGTCC-AGATCCATGCTGAAEST: gi|149082543|gb|EE171738.2|EE171738
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGG-TCCCAGATCCATGCTGAA
EST: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG GCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
genomic: AGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAGgtacagattc ... tttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAA
tgcagtttgactgtactgtatttaacattccatgttaaataatattttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG
atttaac putative branch site (score: 3)
ttttatc putative PPT
tgtatttaacattcca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagattctcaagctgctccgctcgttcgctttagtggcctctaagaatgtagtccgattaattcagtgttactgtggaacagtacaatttgtagttgaaccatttgtctgctcatgctgtgcaaattatttttgatgaaggctgcagtttgactgtactgtatttaacattccatgttaaataatattttatcacagGCTGTCGCTGACATCATACGCACTACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG