Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgctacactatataagttctataatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 3'ss of exon 2
gtaagtgctacac--tatataagttctataatctttcttgcttaaatctcgtgtgcccatagt-gctaatgtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
|||||| | |||| ||| |||||| | || ||||||| ||||||||| ||| | ||||| | ||| ||| |||||| || |||| | ||||||||||| ||||| || | || | ||||||||||| |||||||||||||| ||||||||||||||||||||||||
gtaagtaccacacactatctaagttatgtagg-tttcttgtttaaatctcttgttctcatagaagtcaatttatatgcagAGCGCCAGTCGGAGTGAACTTGAGAGACAAGATTACCCGATTGCCAGGCATCCTGAATTCCGTTACAAGACTGAATTTCAGAGTCATGAACCTGAG
upper sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G42800.1 (Glycine max), 3'ss of exon 2
---------------------gtaagtgctacactat--ataagttctataatc---tttcttgct------taaatctcgtg-tgcccatagt-gctaatgtatgt-gcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
| ||||| | | | | || | || | || |||| | | ||| | || || | ||| | ||| ||| || | | | || | |||||| || ||| | || |||||||||||||||||||||||| || || ||||||||||| ||||| |||
gtaagactgatttttgcttatgcaagtgtttttgtgtcaaaaaaacaaacaaacagattccttgttatgcacttaattttgtaacatgtatgtttgctgaaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAG
upper sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G02640.1 (Glycine max), 3'ss of exon 2
-------------------------------------gtaagtgctacactatataagttctataatctttcttgcttaaatctcgtgtgcccatagtg-ctaatgtatgt-gcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
|| | || | ||| |||| | || ||||| | || | || | ||| ||| || | || | || | |||||| || ||| | || |||||||||||||||||||||||| || || |||||||||||||| || |||
gtaagactattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttg---ttatgcacttaatattgtaacatgtatgttttctgaaacatgcagCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAG
upper sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G20830.1 (Glycine max), 3'ss of exon 2
------------------------------------gtaagtgctacactatataagttctataatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatg--------tgcagAAT-GCTTGTCGAGGAGA-ACTTG-AGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
| ||| | |||| | | || || | | ||| | | | | || | |||||| ||||| || || || || || ||||| ||||| || ||| | || ||| ||||||||||||||||| || || || |||||||||||||| ||||||
gtaattctgattttttcttcagcaatttcttttataactaaaattactaaacttaaggtttgaaagattccat-tttacacccttaatttctctaatatctatgtatactgtaacttgcagCATTGCGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG
upper sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G01440.1 (Glycine max), 3'ss of exon 2
---------------------------------gtaagtgctac-acta-tataagttctata------atctttcttgcttaaatctcgtgtgcccata-gtgctaatgtatgt-gcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
||| | | |||| || ||| || | | || | ||||| | || | | || | || || ||| | | | || | || | |||||| || ||| | || ||| ||||||||||||||||| || || || |||||||||||||| ||||||
gtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG
upper sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtgc---tacactatataagttctat--------aatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
|| ||| | | | | ||| | | | ||| || |||| || | | || | || || | | | || | | || |||||| | || || | ||| |||||||||||||| || || || || |||||||||||||||||||| |||
gtgagttcctttttcttctgcaagatttgtttcgaaaaaatgttatgtgctgtaa-cgcactcttgcaaaatgttactttcagCATGGAGGGTCCA--GGAAGGATCTTGAGCAGACGGATTACCCAGTT---AGGCATCCTGAGTTTCGATATAAAACAGAATTTCAGAGTCATGAACCAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89250814|gb|DY622600.1|DY622600EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST:
gi|91873992|gb|EB403949.1|EB403949EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST:
gi|67012325|gb|CO441074.1|CO441074EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST:
gi|60340196|gb|DN207169.1|DN207169EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAAGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST:
gi|148939774|gb|EC884472.2|EC884472EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST:
gi|148991720|gb|EE033282.2|EE033282EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST:
gi|94472892|gb|EB701850.1|EB701850EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
191CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
Block sizes:
43 (upstream exon),
48 (downstream exon)
Score:
206CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
204CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
Block sizes:
42 (upstream exon),
47 (downstream exon)
Score:
232CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctataatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG
tgctaat putative branch site (score: 232)
ttaaatct TA-rich tract