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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcatactggttttgtttacgctgtactgtaaagactgctagcagatgtagacactagacatgtagtgttctcattttcatttttttctctcatttcagCCCTGCCCCATTTGCTCCCAAAGGATTACAAGGGATATGCTTAACCATATCACCATGCAACATGGTTACTTGTTCAAG

Basic information

species Zea mays
transcript GRMZM2G069018_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069018_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g48190.1 (Oryza sativa), 3'ss of exon 2
cctcatactggttttgtttacgctgtactgtaaagactgctagcagatgtagacactagacat-gtagtgttctc---attttcatttttttctctcatttcagCCCTGCCCCATTTGCTCCCAAAGGATTACAAGGGATATGCTTAACCATATCACCATGCAACATGGTTACTTGTTCAAG
     | |    | | || |  | | ||  ||    |   ||       || | | |   ||| ||  | |||||   ||||   |  ||| || |  ||||||||||| ||||| |||| | ||| ||||||||| |||||| | || |||||||||||||||||||||||||||||||||
----gttcaaagtatattaaatcagcaccttatgttcatatattgtgcatataaaatgtgcattgtgttcttctcctgatttatttgctttgctttgctttcagCCCTGTCCCATCTGCTTCGAAAAGATTACAAGAGATATGTTAAATCATATCACCATGCAACATGGTTACTTGTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78123905|gb|DV542289.1|DV542289
EST:     CCCTCTGCATCCACCTCGAGGAGGACCACCCCTACGAGCCCCACGCCGCG                         CCCTGCCCCATTTGCTCCCAAAGGATTACAAGGGATATGCTTAACCATATC
genomic: CCCTCTGCATCCACCTCGAGGAGGACCACCCCTACGAGCCCCACGCCGCGgtgagtcagt ... ctcatttcagCCCTGCCCCATTTGCTCCCAAAGGATTACAAGGGATATGCTTAACCATATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtagacactagacatgtagtgttctcattttcatttttttctctcatttcagCCCTGCCCCATTTGCTCCCAAAGGATTACAAGGGATATGCTTAACCATATCACCATGCAACATGGTTACTTGTTCAAG
                      tgttctcattttcatt  CT-rich tract
                           tcattttcattttttt  TA-rich tract