1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attggagtcgaatgtacagacttgtaggatattccagaaatgttttagcatgccttttgatttaagcatgtacctgttaaaagtcttctgtgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG
species | Zea mays |
transcript | GRMZM2G069009_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTEST: gi|78082860|gb|DV511253.1|DV511253
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTEST: gi|78082473|gb|DV510885.1|DV510885
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTEST: gi|76286604|gb|DV026172.1|DV026172
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTEST: gi|149102933|gb|EE288285.2|EE288285
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
EST: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCG GTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
genomic: GCTACGGGGAGCGCTGCCGCTACAACCACCCCCGCGATCGGCCGGCCCCGgtgagaacca ... tgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCT
tagcatgccttttgatttaagcatgtacctgttaaaagtcttctgtgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG
ttttgat putative branch site (score: 4)
tcttctgtgttttcc putative PPT
ttttgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggagtcgaatgtacagacttgtaggatattccagaaatgttttagcatgccttttgatttaagcatgtacctgttaaaagtcttctgtgttttccagGTTAATGGAGTTGGAAAGACCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG