1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgatatgcgtttctgctgctggctcgtcgaattgttgttgtgctctgtgattgattgattggatgacgtttctcaatttgcgctcgattgcgtctggatctgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG
species | Zea mays |
transcript | GRMZM2G069008_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATEST: gi|149111714|gb|EE190861.2|EE190861
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAG GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATEST: gi|29543762|gb|CB604142.1|CB604142
genomic: AGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
EST: GGTTCTCATCCAG GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
genomic: GGTTCTCATCCAGgtgatatgcg ... tgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGAT
tgattggatgacgtttctcaatttgcgctcgattgcgtctggatctgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG
tcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatgcgtttctgctgctggctcgtcgaattgttgttgtgctctgtgattgattgattggatgacgtttctcaatttgcgctcgattgcgtctggatctgcgatgcagGGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT