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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacataatttagcatattagtaccaattttatttagtagattatttctggactgcaagaatgtgttccaacttttttttcttccatccctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCACCTTATTGCATGATGAATCTGATGCAGGAAGCACCAGTTTGCTACCGCC

Basic information

species Zea mays
transcript GRMZM2G068690_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430393|gb|DR811443.1|DR811443
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|22472364|gb|BU036844.1|BU036844
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|87156444|gb|DY401233.1|DY401233
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|93281796|gb|EB674060.1|EB674060
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
EST: gi|22541939|gb|BU092377.1|BU092377
EST:     TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATG                         TGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA
genomic: TACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTCATCAAAATGgtaaagtctt ... ctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctggactgcaagaatgtgttccaacttttttttcttccatccctttttgcagTGTGCTGCACTGCCGGAGTATCAGGGGAAAACGCTGAAATCATGGAAATCACCTTATTGCATGATGAATCTGATGCAGGAAGCACCAGTTTGCTACCGCC
                 tgtgttccaacttttt  CT-rich tract
                         aacttttttttctt  TA-rich tract