Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA

Basic information

species Zea mays
transcript GRMZM2G068489_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g16550.1 (Oryza sativa), 3'ss of exon 2
cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
|   |  | | |   |||    |    |    | | | | ||  || |    ||  | |  |   | |   | |   |      | |   | | || ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||||||||||||| || |
ctttttgttagtacatgccaaagagtctgatcagtcagtgtcaaacttgagattgttttgcagtgtatcctaatcttttctctgaccatgcaatcatcagGTTGTTCCATGGGGCGATTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACA

upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv01s0026g01860.t01 (Vitis vinifera), 3'ss of exon 3
cacatgctaaatttgtgcgtgc--ggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatc-gatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
    || | | | ||   ||    | || ||    ||     ||     |      | | |    ||||   || ||| | | |   |   | | | |   ||||| |||||||||| ||| |||| || ||||| ||||| ||  ||||| |||| ||||||||||| ||||| || ||||| || ||||||||||| || |
---gtgatgattgtgatagtaaaagatccttagttctcttcttcaattttgatacatttatctggcattagacattaattttttctttttaaacaatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGGATGTGGACATCCTAGTGACTGGACACACCCATCAGTTCAAGGCCTACA

upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S75_108V6.1 (Physcomitrella patens), 3'ss of exon 2
cacatgctaaatttgtgcgtgcggtcattgag-actgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
||  |  | | ||| |   |     | |  |  | |   |||   |  |   |||  | ||      ||||  ||       |   || || || |  |||||||| |||||||| ||  |||| ||  |||||||||| || |||||||| ||||| || || ||| | || || ||||| ||||||||||| ||||| |
catgtttttagtttatttatttaaacgtaaattaatatttatactagcttcctttccttttcttttcttttatcttcggtgttttttctat-gatctgcagGTTGTGCCATGGGGAGATTTGGATTCATTGGCGATGCTTCAACGGCAGCTAGACGTTGATATTCTGATCACTGGTCACACTCACCAGTTCAAAGCATACA

upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ29006 (Selaginella moellendorffii), 3'ss of exon 2
cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgat-cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
                                        | | |   ||   | |      |   | | ||   |    |||      |  |  |  |||||  | || ||||||||| |||| |||||||| ||||||||| ||||||| ||||| ||||||||  | |||||||||||||||||||||||||| || |
---------------------------------------gtataattcattcatcgcccctga---tctccatccatctcctgtgctcttgtgctcttcagGTGATCCCCTGGGGCGACTTGGATTCCCTGGCAATGCTCCAGAGGCAGCTCGACGTTGACATCCTCATCACCGGGCACACGCACCAGTTCAAGGCGTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18164354|gb|BM334193.1|BM334193
EST:     TTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: TTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18173411|gb|BM348799.1|BM348799
EST:     AGACACTTGCAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|9254692|gb|BE345160.1|BE345160
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18171994|gb|BM347382.1|BM347382
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18171590|gb|BM341430.1|BM341430
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCTATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18176390|gb|BM351361.1|BM351361
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166858|gb|BM336697.1|BM336697
EST:     AGGCACTTACGATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17930508|gb|BM267468.1|BM267468
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|37381752|gb|CF627773.1|CF627773
EST:     AGACACTTACAATTGGTCACTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929877|gb|BM266837.1|BM266837
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172308|gb|BM347696.1|BM347696
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166018|gb|BM335857.1|BM335857
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|71770169|gb|DR968106.1|DR968106
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|28986711|gb|CB351272.1|CB351272
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172679|gb|BM348067.1|BM348067
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166494|gb|BM336333.1|BM336333
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGACTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162565|gb|BM332404.1|BM332404
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162562|gb|BM332401.1|BM332401
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170906|gb|BM340746.1|BM340746
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|89758464|gb|DY687636.1|DY687636
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168831|gb|BM338671.1|BM338671
EST:     GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCT-GCAGATGCTCCAACGGCAGCT
genomic: GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGC-GATGCTCCAGCGGCAGCT
EST: gi|17929470|gb|BM266430.1|BM266430
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18164204|gb|BM334043.1|BM334043
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18167618|gb|BM337458.1|BM337458
EST:     GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGACGATGCTCCAGCGGCAGCTG
genomic: GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16922447|gb|BM075582.1|BM075582
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211108545|gb|FL307928.1|FL307928
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATNGCTCCAGCGGCAGCT
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGAT-GCTCCAGCGGCAGCT
EST: gi|18170147|gb|BM339987.1|BM339987
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18171992|gb|BM347380.1|BM347380
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929975|gb|BM266935.1|BM266935
EST:     AGACACTTGCAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17931451|gb|BM268411.1|BM268411
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|101391954|gb|EB817907.1|EB817907
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|37374227|gb|CF623458.1|CF623458
EST:     GGGCTGTAGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GGGCTGT-GCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18175175|gb|BM350563.1|BM350563
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16922766|gb|BM075758.1|BM075758
EST:     CTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: CTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166233|gb|BM336072.1|BM336072
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCAG-CCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGC-GACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
EST: gi|18172919|gb|BM348307.1|BM348307
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929736|gb|BM266648.1|BM266648
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165883|gb|BM335722.1|BM335722
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|67014558|gb|CO443307.1|CO443307
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162668|gb|BM332507.1|BM332507
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18176758|gb|BM351691.1|BM351691
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18175924|gb|BM351064.1|BM351064
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|13490697|gb|BG517461.1|BG517461
EST:     GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGTTTCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
genomic: GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATG-GCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
EST: gi|60395430|gb|DN228300.1|DN228300
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|67021172|gb|CO449921.1|CO449921
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16379711|gb|BI993107.1|BI993107
EST:     GCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211152981|gb|FL362973.1|FL362973
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGC-ATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGG
EST: gi|18169374|gb|BM339214.1|BM339214
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60340695|gb|DN207668.1|DN207668
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|28986213|gb|CB351025.1|CB351025
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211370861|gb|FL366763.1|FL366763
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATG
EST: gi|71775398|gb|DR973276.1|DR973276
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174724|gb|BM350112.1|BM350112
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168678|gb|BM338518.1|BM338518
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|9731462|gb|BE510214.1|BE510214
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18175731|gb|BM350939.1|BM350939
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|40303609|gb|CK347996.1|CK347996
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|50323066|gb|CO518192.1|CO518192
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18173264|gb|BM348652.1|BM348652
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|5649996|gb|AI920356.1|AI920356
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16920491|gb|BM074682.1|BM074682
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|5608043|gb|AI901710.1|AI901710
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166181|gb|BM336020.1|BM336020
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|91053188|gb|EB163606.1|EB163606
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168071|gb|BM337911.1|BM337911
EST:     TTTAAGCTTGGGCTGTCCCATGACCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: TTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172676|gb|BM348064.1|BM348064
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60352727|gb|DN219700.1|DN219700
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168695|gb|BM338535.1|BM338535
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|5686762|gb|AI939855.1|AI939855
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|6994052|gb|AW453266.1|AW453266
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165026|gb|BM334871.1|BM334871
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16920827|gb|BM074850.1|BM074850
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|6653791|gb|AW267196.1|AW267196
EST:     AGNCNCTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCAATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168243|gb|BM338089.1|BM338089
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170733|gb|BM340573.1|BM340573
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172404|gb|BM347792.1|BM347792
EST:     AGACACTGACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170505|gb|BM340345.1|BM340345
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60400169|gb|DN232976.1|DN232976
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211267936|gb|FL351845.1|FL351845
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCAKCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18167989|gb|BM337829.1|BM337829
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211107623|gb|FL307905.1|FL307905
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTT
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT-
EST: gi|28986457|gb|CB351147.1|CB351147
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|67038791|gb|CO465046.1|CO465046
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17931857|gb|BM268817.1|BM268817
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174844|gb|BM350232.1|BM350232
EST:     GCCATGGCCATCAG                         GTTGTTCCATGGGACGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170750|gb|BM340590.1|BM340590
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18175265|gb|BM350641.1|BM350641
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18173147|gb|BM348535.1|BM348535
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929554|gb|BM266514.1|BM266514
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165762|gb|BM335601.1|BM335601
EST:     GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGAACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17932426|gb|BM269386.1|BM269386
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211273879|gb|FL312153.1|FL312153
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGNACTCCCTGGCGATGCTCCCAGCG-CAGCT
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCC-AGCGGCAGCT
EST: gi|17929714|gb|BM266680.1|BM266680
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165393|gb|BM335232.1|BM335232
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162168|gb|BM332007.1|BM332007
EST:     AGACACTTACAATTGGTCAGTTTAGGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162241|gb|BM332080.1|BM332080
EST:     CAATTGGTCAGTTTAAGCTTGGACTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: CAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174127|gb|BM349515.1|BM349515
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|91874254|gb|EB404211.1|EB404211
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168576|gb|BM338416.1|BM338416
EST:     AGACACTTGCAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGGCCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162464|gb|BM332303.1|BM332303
EST:     GTCAGTTT-AGCTTGGGGCTGTGCCAAGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GTCAGTTTAAGCTT-GGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211405213|gb|FL477459.1|FL477459
EST:     ACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTCCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: ACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174061|gb|BM349449.1|BM349449
EST:     GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|33942589|gb|CF349189.1|CF349189
EST:     ACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: ACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|71770168|gb|DR968105.1|DR968105
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16921680|gb|BM075252.1|BM075252
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60340839|gb|DN207812.1|DN207812
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60346136|gb|DN213109.1|DN213109
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|9461399|gb|BE453713.1|BE453713
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18164498|gb|BM334337.1|BM334337
EST:     GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAACGGCAGCTG
genomic: GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTG-CCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18176377|gb|BM351352.1|BM351352
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|4646771|gb|AI621846.1|AI621846
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172810|gb|BM348198.1|BM348198
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929791|gb|BM266751.1|BM266751
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 211

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 274

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 222

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 312

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
                         cactaaa  putative branch site (score: 312)
           tgttaaacattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA

- catgcta
- - - - - - - -tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcatc