1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtcgctgcacattcaggtcatacctatggtatcttgattgcagtttttgttgcacatatatttacctagtttatggccaccaatgcctggctaaatcctctcccgaaaatagaggttctgaatcctgaatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGTGCAGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGA
species | Zea mays |
transcript | GRMZM2G068392_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGEST: gi|211273924|gb|FL314979.1|FL314979
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAG
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTEST: gi|50331308|gb|CO526434.1|CO526434
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGT
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC- -T--GTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGEST: gi|78106604|gb|DV525022.1|DV525022
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAG
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGEST: gi|71438417|gb|DR819467.1|DR819467
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAG
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAG
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAG
atgcctggctaaatcctctcccgaaaatagaggttctgaatcctgaatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGTGCAGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGA
ggctaaa putative branch site (score: 3)
aaaataga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgctgcacattcaggtcatacctatggtatcttgattgcagtttttgttgcacatatatttacctagtttatggccaccaatgcctggctaaatcctctcccgaaaatagaggttctgaatcctgaatttgctagGTAGGTAGAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGTGCAGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA