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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttactgaaactagtggaagattaggagagagggatggagcagtccaaattctggttctggttattattctgtcttaccttaacatctttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG

Basic information

species Zea mays
transcript GRMZM2G068277_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068277_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g02690.1 (Oryza sativa), 3'ss of exon 5
-----------------------------------------------gtcagttactgaaactagtggaagattaggag---agagggatggagcagtccaaattctggttctgg--ttattattctgtcttaccttaacatctttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
                                                      | |  |   | || ||  |  | |    ||    |   | |||| || ||  ||  |      ||||| || |  |||| | |  ||  | |||||||||||| |||||| | ||||| ||||||||||| || |||||||||||
gtcagtttttgaatcttgctatgactaccaatttcactccctgcgttcctgtccattttatgcaatgcaacttgggcaacttagttttagacaacagtacacatcttgtattcaatattattgttttagcttaacatttcaaatgtgctgcagATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194463|gb|AW146567.1|AW146567
EST:     AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG                         ATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
genomic: AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGGgtcagttact ... tttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
EST: gi|71443221|gb|DR824271.1|DR824271
EST:     AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG                         ATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
genomic: AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGGgtcagttact ... tttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
EST: gi|5895704|gb|AW036950.1|AW036950
EST:     AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG                         ATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
genomic: AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGGgtcagttact ... tttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
EST: gi|60337416|gb|DN204389.1|DN204389
EST:     AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG                         ATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
genomic: AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGGgtcagttact ... tttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
EST: gi|60347346|gb|DN214319.1|DN214319
EST:     AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG                         ATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
genomic: AGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGGgtcagttact ... tttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccaaattctggttctggttattattctgtcttaccttaacatctttgctgcagATTCGTCATCCCTCAGTCAAATTTCAAGTGCTAGGCTTCCAGAAAG
                                   ccttaac  putative branch site (score: 3)
                                           tctttgct  CT-rich tract
                   ttattattct  TA-rich tract