Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtttccatcagccgcacggatgatccttgttcttggatccgattaattaacctgaaacgttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG

Basic information

species Zea mays
transcript GRMZM2G068193_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068193_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g40170.1 (Oryza sativa), 3'ss of exon 2
-----------------------------------gtcggttt--ccatcag--ccgcacggatgatccttgttcttggatccgatta-attaacctgaaacgttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG
                                    || | ||    ||| |   |||| |  ||||   ||||||||||||  | |    | |   ||    ||   |||||| || || |||||||||||||| |||||| |||| ||||| ||  | ||||||||||| ||||||||||| ||||| || ||||||||||| |
gtccggttcctacatcctactactagcagtctctaatctgcttggtgatctgtttcgcatgcgtgatttctgttcttggatctcactgtgatgaatggattatttttcgcagATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229860|gb|CF920173.1|CF920173
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|74241826|gb|DT649740.1|DT649740
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|28909866|gb|CB331138.1|CB331138
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|78105695|gb|DV524113.1|DV524113
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|148962492|gb|EE013355.2|EE013355
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|94472111|gb|EB701069.1|EB701069
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71302774|gb|DR787498.1|DR787498
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTAC-GGGCCCCCCGAGATTCTGCTTGGAGCCACGCA
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCC-GAGATTCTGCTTGGAGCCACGCA
EST: gi|76018820|gb|DT945990.1|DT945990
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|86471384|gb|DY237754.1|DY237754
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|76018821|gb|DT945991.1|DT945991
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|60340813|gb|DN207786.1|DN207786
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71329066|gb|DR801242.1|DR801242
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|211319984|gb|FK976018.1|FK976018
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|50330881|gb|CO526007.1|CO526007
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|148980459|gb|EE027145.2|EE027145
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGC
EST: gi|101392380|gb|EB818119.1|EB818119
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71430257|gb|DR811307.1|DR811307
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|91873818|gb|EB403775.1|EB403775
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|78105696|gb|DV524114.1|DV524114
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71434993|gb|DR816043.1|DR816043
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|26456877|gb|CA828460.1|CA828460
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCT
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCT
EST: gi|93013229|gb|EB638749.1|EB638749
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCC
EST: gi|74240146|gb|DT648060.1|DT648060
EST:     ACACCCCCGAG                         ATACTTCCCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: ACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|76922226|gb|DV168907.1|DV168907
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|101384207|gb|EB814148.1|EB814148
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|101384209|gb|EB814149.1|EB814149
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|31405807|gb|CD484539.1|CD484539
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|22542169|gb|BU092607.1|BU092607
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTG
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTG
EST: gi|91052242|gb|EB162660.1|EB162660
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCCCGAG                         ATACTTACCCTGTGGTACAGGGCCCCCG
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCG
EST: gi|76922225|gb|DV168906.1|DV168906
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|78080019|gb|DV508431.1|DV508431
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|93283535|gb|EB675799.1|EB675799
EST:     TCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGTTTGGAGCCACGCAC
genomic: TCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71329065|gb|DR801241.1|DR801241
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|76916678|gb|DV166498.1|DV166498
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|78089074|gb|DV517465.1|DV517465
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|50338053|gb|CO533179.1|CO533179
EST:     CAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: CAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|89757629|gb|DY687150.1|DY687150
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|74239490|gb|DT647404.1|DT647404
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|87156588|gb|DY401377.1|DY401377
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|91878044|gb|EB408001.1|EB408001
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|20506788|gb|BQ279341.1|BQ279341
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCT
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCT
EST: gi|211319987|gb|FK976021.1|FK976021
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71766503|gb|DR964440.1|DR964440
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|71430256|gb|DR811306.1|DR811306
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|74239489|gb|DT647403.1|DT647403
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|28873402|gb|CB329397.1|CB329397
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCT
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCT
EST: gi|60354544|gb|DN221517.1|DN221517
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|211319986|gb|FK976020.1|FK976020
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|50338054|gb|CO533180.1|CO533180
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|93015812|gb|EB641332.1|EB641332
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|31910221|gb|CD651315.1|CD651315
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
EST: gi|88748411|gb|DY532552.1|DY532552
EST:     TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAG                         ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC
genomic: TCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 398

GCACAACCTCCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 17

GCACAACCTCCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 23

GCACAACCTCCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 55

GCACAACCTCCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGCCTCAGCCGCGCCATCACCGTCCCGGTGAAGAAGTACACCCACGAGgtcggtttcc ... gttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacggatgatccttgttcttggatccgattaattaacctgaaacgttgctgcagATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG
                               aattaac  putative branch site (score: 55)
                            attaattaa  TA-rich tract