1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttcccaacgcgtgaccagcccttttctcttgtggattgtctgttcatgatttaaattgtttgttttcttggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGATATATCAAATGAGGCTGAAGCTGGATTTAAACCTGATGGAGCACTATG
species | Zea mays |
transcript | GRMZM2G067764_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCT GTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGEST: gi|89250850|gb|DY622636.1|DY622636
genomic: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCTgtaagttccc ... ggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTG
EST: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCT GTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGEST: gi|74245364|gb|DT653278.1|DT653278
genomic: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCTgtaagttccc ... ggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTG
EST: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCT GTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGEST: gi|88752440|gb|DY536581.1|DY536581
genomic: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCTgtaagttccc ... ggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTG
EST: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCT GTGTGTGATGACCGGCACTCTGAACTGATCCEST: gi|149087020|gb|EE176561.2|EE176561
genomic: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCTgtaagttccc ... ggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCC
EST: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCT GTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGEST: gi|93011970|gb|EB637490.1|EB637490
genomic: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCTgtaagttccc ... ggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTG
EST: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCT GTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTG
genomic: CCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCCAAGAGCTTTCCTgtaagttccc ... ggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTG
tctcttgtggattgtctgttcatgatttaaattgtttgttttcttggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGATATATCAAATGAGGCTGAAGCTGGATTTAAACCTGATGGAGCACTATG
ttttcttg CT-rich tract
atgatttaaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcccaacgcgtgaccagcccttttctcttgtggattgtctgttcatgatttaaattgtttgttttcttggttgcttagGTGTGTGATGACCGGCACTCTGAACTGATCCCCTGCTTGGATAGGAACTTGATATATCAAATGAGGCTGAAGCTGGATTTAAACCTGATGGAGCACTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA