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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACA

Basic information

species Zea mays
transcript GRMZM2G067476_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067476_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 3'ss of exon 2
gtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagt---aaagttaatga--ttaccttgact-ctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACA
|||||| |||||  |   |||| || ||||| |     |   | ||  ||   | ||  |||||  ||| |||   | |||  ||||||| ||||||||| ||  ||| |||| |||||||||||  |||||||||||| || |||||||| ||  | ||||| || ||||||||||||||| | 
gtgagtgcatttcatgcagcatctctctgctatgtgattcattataaggtgttacaggaaatgactttatctttgttgcttctagTGGTGTCACTGCTTCGCATGCATTTGTCTTGGAGACCAAAGTACAGGGCAGGTTTCAAGGTTCACCTGCGGTTATTACCTATCGTGTTCCCACAAAGGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18163508|gb|BM333347.1|BM333347
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18173129|gb|BM348517.1|BM348517
EST:     ATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: ATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18164000|gb|BM333839.1|BM333839
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18167113|gb|BM336952.1|BM336952
EST:     AATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: AATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17932024|gb|BM268984.1|BM268984
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18176508|gb|BM351441.1|BM351441
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18168815|gb|BM338655.1|BM338655
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18161892|gb|BM331731.1|BM331731
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18168234|gb|BM338074.1|BM338074
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|148963283|gb|EE014273.2|EE014273
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17931731|gb|BM268691.1|BM268691
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|16926595|gb|BM079663.1|BM079663
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18173140|gb|BM348528.1|BM348528
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|16378806|gb|BI992621.1|BI992621
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|37391749|gb|CF633118.1|CF633118
EST:     TATGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18649161|gb|BM497980.1|BM497980
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|148973350|gb|EE024440.2|EE024440
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|7135836|gb|AW498291.1|AW498291
EST:     GAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: GAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17930017|gb|BM266977.1|BM266977
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18181378|gb|BM382588.1|BM382588
EST:     ACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: ACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18167604|gb|BM337444.1|BM337444
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18649160|gb|BM497979.1|BM497979
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCNAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18174175|gb|BM349563.1|BM349563
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18174386|gb|BM349774.1|BM349774
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18162934|gb|BM332773.1|BM332773
EST:     ATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: ATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|22819811|gb|BU499901.1|BU499901
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18172051|gb|BM347439.1|BM347439
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|17930674|gb|BM267634.1|BM267634
EST:     GCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: GCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|78081514|gb|DV509926.1|DV509926
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|50331163|gb|CO526289.1|CO526289
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|5108408|gb|AI740121.1|AI740121
EST:     TGGAGAGAAATCGAAGCCATTGGAAAGGCTTGACCC                         TGGTGCCCCTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|60400336|gb|DN233143.1|DN233143
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18171772|gb|BM341612.1|BM341612
EST:     AGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: AGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|78081882|gb|DV510294.1|DV510294
EST:     TGAGCTTGTCACTGGAGAGAAATTGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|89249775|gb|DY621561.1|DY621561
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18172256|gb|BM347644.1|BM347644
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18172871|gb|BM348259.1|BM348259
EST:     GAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: GAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|31357834|gb|CD442191.1|CD442191
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|28985718|gb|CB350781.1|CB350781
EST:     TTTGAGCTTGTCACTGGAAAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|110524573|gb|EE028757.1|EE028757
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18168659|gb|BM338499.1|BM338499
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: gi|18163404|gb|BM333243.1|BM333243
EST:     TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC                         TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATCATTACATACCGTGTTCCCACAAAGACA
                                        ccttgac  putative branch site (score: 4)
                                              ctctttc  CT-rich tract
                         taaagttaatgatta  TA-rich tract