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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaccgtcgcgctcctaggttcgccgtcgcctgacgatctgactctctgagtctgagctgcgcaactccctgcatgcagTGACGCAAAAGGCAGTCTTGCTCTGCGCGCAGGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCTACAACTTCGCCGGGACC

Basic information

species Zea mays
transcript GRMZM2G067096_T08
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067096_T08 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g51550.1 (Oryza sativa), 3'ss of exon 2
gtgagaccgtcgcgctcctaggttcgccgtcgcctgacg-atctgactctctgagtctgagctgcgcaactccctgcatgcagTGACGCAAAAGGCAGTCTTGCTCTGCGCGCAGGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCTACAACTTCGCCGGGACC--------------------------------
                               | | | |   |  | | ||| |  | |    || ||     |  |||||||    |     |       | || |||   |||||||| || ||||||||||||||||  ||||| ||| ||  |||||||||| ||||||||||||||||                                 
-------------------------------gtccgtcccgttcgtccctccgtctgtccattg-gcgctcgcgcgcatgcatatgcatttgatttttgttggcgctgta-gcagGAGCACATAGCATCGGGAAGGTGCATTGCAGATTCTTCAAGGACAGGATCGACAACTTCGCCGGGACAGGCGAGCCTGACGACACCATCGACGCCGACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149031460|gb|EE286352.2|EE286352
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|149031460|gb|EE286352.2|EE286352
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|149087495|gb|EE176894.2|EE176894
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|149087495|gb|EE176894.2|EE176894
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|149012850|gb|EE042690.2|EE042690
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|149012850|gb|EE042690.2|EE042690
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|148951748|gb|EC897505.2|EC897505
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         TGACGCAAAAGGCAGTCTTGCTCTGCGC
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcagTGACGCAAAAGGCAGTCTTGCTCTGCGC
EST: gi|149000000|gb|EE037089.2|EE037089
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|149000000|gb|EE037089.2|EE037089
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|148949041|gb|EC894464.2|EC894464
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-
EST: gi|148949041|gb|EC894464.2|EC894464
EST:     CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGC                         G
genomic: CTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgt ... ctgcatgcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcgcctgacgatctgactctctgagtctgagctgcgcaactccctgcatgcagTGACGCAAAAGGCAGTCTTGCTCTGCGCGCAGGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCTACAACTTCGCCGGGACC
            atctgac  putative branch site (score: 3)
                                         ctccctgc  putative PPT