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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgccgtcgcctgacgatctgactctctgagtctgagctgcgcaactccctgcatgcagtgacgcaaaaggcagtcttgctctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCTACAACTTCGCCGGGACCGGCGCGCCGGACGACTCCATCGACCCGGACAT

Basic information

species Zea mays
transcript GRMZM2G067096_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067096_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g51550.1 (Oryza sativa), 3'ss of exon 2
gttcgccgtcgcctgacg-atctgactctctgagtctgagctgcgcaactccctgcatgcagtgacgcaaaaggcagtcttgctctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCTACAACTTCGCCGGGACCGGCGCGCCGGACGACTCCATCGACCCGGACAT
          | | | |   |  | | ||| |  | |    || ||     |  |||||||    |     |       | || |||   |||||||| || ||||||||||||||||  ||||| ||| ||  |||||||||| |||||||||||||||| |||| ||| |||||| |||||||| | |||||
----------gtccgtcccgttcgtccctccgtctgtccattg-gcgctcgcgcgcatgcatatgcatttgatttttgttggcgctgta-gcagGAGCACATAGCATCGGGAAGGTGCATTGCAGATTCTTCAAGGACAGGATCGACAACTTCGCCGGGACAGGCGAGCCTGACGACACCATCGACGCCGACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149031460|gb|EE286352.2|EE286352
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|148949041|gb|EC894464.2|EC894464
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|149087495|gb|EE176894.2|EE176894
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|148932883|gb|EE285652.2|EE285652
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGT
EST: gi|149000000|gb|EE037089.2|EE037089
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|149058885|gb|EE156905.2|EE156905
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCAT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCAT
EST: gi|149015526|gb|EE045398.2|EE045398
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATC
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATC
EST: gi|149012850|gb|EE042690.2|EE042690
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|148951448|gb|EC897173.2|EC897173
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCCACAGCATCGGGAAAGGTGCGGTGCAGGTTCATCGCGGACAGGAT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCC-ACAGCATCGGGAA-GGTGCGGTGCAGGTTCATCGCGGACAGGAT
EST: gi|149076464|gb|EE165087.2|EE165087
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAG
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAG
EST: gi|148936554|gb|EC880672.2|EC880672
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATC
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATC
EST: gi|148952061|gb|EC897850.2|EC897850
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|149098075|gb|EE184027.2|EE184027
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGAGGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
EST: gi|148949404|gb|EC894862.2|EC894862
EST:     GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAG                         GAGCCCACAGCATCGGGGAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT
genomic: GTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtc ... ctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcgcaactccctgcatgcagtgacgcaaaaggcagtcttgctctgcgcgcagGAGCCCACAGCATCGGGAAGGTGCGGTGCAGGTTCATCGCGGACAGGATCTACAACTTCGCCGGGACCGGCGCGCCGGACGACTCCATCGACCCGGACAT
                                      tcttgctct  CT-rich tract