1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggatacggagagggagtctgctggagttggtctaagtagtgcagcaggaattcaaatacccagctgaactgaacaatatgaattaactgccgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGCTGGCGTTCAACTGCACGTTCCTGCTCTTCGGCACGGTCATCCAGCTGA
species | Zea mays |
transcript | GRMZM2G067022_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAG TGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGEST: gi|91870569|gb|EB400953.1|EB400953
genomic: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAGgtgggtcggt ... cgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGG
EST: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAG TGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGEST: gi|78111088|gb|DV529485.1|DV529485
genomic: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAGgtgggtcggt ... cgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGG
EST: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAG TGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGEST: gi|91871140|gb|EB401266.1|EB401266
genomic: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAGgtgggtcggt ... cgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGG
EST: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAG TGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGEST: gi|93014357|gb|EB639877.1|EB639877
genomic: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAGgtgggtcggt ... cgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGG
EST: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAG TGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGG
genomic: GCACCCGGAAGGAGAAGGAGGGCGTCAGCTTCAGGAACCACGTCATCCAGgtgggtcggt ... cgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGG
aggaattcaaatacccagctgaactgaacaatatgaattaactgccgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGCTGGCGTTCAACTGCACGTTCCTGCTCTTCGGCACGGTCATCCAGCTGA
aattaac putative branch site (score: 3)
aacaatatgaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatacggagagggagtctgctggagttggtctaagtagtgcagcaggaattcaaatacccagctgaactgaacaatatgaattaactgccgttggccagTGGTTCGAAGTTCTGGACGGGCTCCTGGGCCCGTACTGGAAGGCGGCCGGGCTGGCGTTCAACTGCACGTTCCTGCTCTTCGGCACGGTCATCCAGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - tctgctg
- - - - - - - - - - - - - - - - - - - - gcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata