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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgatttaaatgttttccaggcttctcttttctgtcacatgacagattttagtttagtaacatcttgttcgtcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGCTGATCCATCTAGTTCTCCACGGGATTGCACTTGTCCTTGGTGCGGTTGG

Basic information

species Zea mays
transcript GRMZM2G066885_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066885_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g42890.1 (Oryza sativa), 3'ss of exon 2
gtaaatgatttaaatgttttccaggcttctcttttctgtcacatgacagattttagtttagtaacat-cttgttcgtcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGCTGATCCATCTAGTTCTCCACGGGATTGCACTTGTCCTTGGTGCGGTTGG
|||| |  |||   |||| |       |   || | ||   | ||  | | |||    |||||| || | |  ||    ||| |||||||||||||||||| ||| ||||| || | ||| || || |||| |||||||||||||||| ||||||| |  ||||| |||||  | |||||||||||
gtaagttgttttgttgttatt--attattatttctgtggttcgtggaaaagttt----tagtaatattccttctccattttggcagCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACTAAGCTGATCCATCTAATTCTCCATGCAATTGCCCTTGTATTCGGTGCGGTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211288140|gb|FL278509.1|FL278509
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACNAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|211096758|gb|FL470670.1|FL470670
EST:     GTTCACCCTGTTCTTATGC-TATAGGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGGGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTAT-CGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|211288139|gb|FL278508.1|FL278508
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|71424805|gb|DR806443.1|DR806443
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|211055163|gb|FK977534.1|FK977534
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGGGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|148965066|gb|EC906072.2|EC906072
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|50323144|gb|CO518270.1|CO518270
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|211055161|gb|FK977532.1|FK977532
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGGGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|211288138|gb|FL278507.1|FL278507
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|148946110|gb|EC891404.2|EC891404
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
EST: gi|76287729|gb|DV027297.1|DV027297
EST:     GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAG                         CTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC
genomic: GTTCACCCTGTTCTTATGCTTATCGGTTATATTATCATCGGCGGCGAAGgtaaatgatt ... tcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttctgtcacatgacagattttagtttagtaacatcttgttcgtcgttgtcagCTATAATGGTATACAGGGTACTTCCAACATCGAACCACGAGACAAATAAGCTGATCCATCTAGTTCTCCACGGGATTGCACTTGTCCTTGGTGCGGTTGG
                            tagtaac  putative branch site (score: 1)
                   attttagtttagtaa  TA-rich tract