Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaccttggaagcaacacctctgtgatacagctaaaatgcaagcacacaaaggcgcttttctcatttgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG

Basic information

species Zea mays
transcript GRMZM2G066460_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066460_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g03640.1 (Oryza sativa), 3'ss of exon 3
----------gtgaccttggaagcaacacctctgtgatacagctaaaatgcaagcacacaa--aggcgcttttctcatttgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG
          ||    |||  |  ||   || | |  |     ||     |||| |  |||  |   | | |     ||  |   ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||
gtgatcatttgttgatttgttaataaatactatcttgtctgcttagt---caagtagtcaactacatgttctcactgttcctatcttgttacagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACTGTGGAAATTATCACCCCTGTGGAGCTCATTAAGAAGGGTGACAAGGTGGGCTCCTCCGAGTCTG

upper sequence: GRMZM2G066460_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g04070.1 (Oryza sativa), 3'ss of exon 3
gtgacc--ttggaagcaacacctctgtgatacagctaaaatgcaagcacacaaaggcgcttttctcatttgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG
|||| |  ||| |          |  |  |  | ||     |||  || | | | |   || || |  || ||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||
gtgatcatttgtagatgtgttaaccatagtttatctt---cgcagtcaaatacaag---ttctcactgttctctcttgttacagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTCATTAAGAAGGGTGACAAGGTTGGCTCCTCTGAGTCTG

upper sequence: GRMZM2G066460_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g03880.1 (Oryza sativa), 3'ss of exon 3
gtgaccttggaagcaacacctctgtgatacagctaaaatgcaagcacacaaaggcgcttttctcatttgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG
|||| | |     | |    |     |||  | | |    ||    || | |   | | |     ||  |   ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| || |||||||
gtgatcatttgt-cgatgtgttaac-atattgtttatcctcagagtcaaatacaagttctcactgttc-tatcttgttacagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACTGTGGAAATTATCACCCCTGTAGAGCTCATTAAGAAGGGTGACAAGGTTGGCTCCTCTGAGTCTG

upper sequence: GRMZM2G066460_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S39_424V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------gtgaccttggaagcaacacctctgtgat-acagctaaaatgcaagcacacaaaggcgcttttctcatttgtcatttgtt-----ccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG
                     |||     ||    |    |      | ||| || | ||     | |||     || || |  ||  ||     ||||      ||||| || ||||||||||| ||||||||||||||||| || ||||||||  | ||||| |||||  || | |||||||| ||||| || || |||||| |||
gtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtc-cactttc-cgtttctgacacctgatgcgtgttgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCTCCTGTAGAGCTCGTCCACAAGGGTGACAAGGTCGGATCATCCGAGGCTG

upper sequence: GRMZM2G066460_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S38_196V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------gtgaccttg----gaagcaacacctctgtgatacagctaaaatgcaagcacacaaaggcgcttttctcatt---tgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG
                                                                          ||| ||||     || |      || | ||  |    | ||| ||    |    ||||    |  |  ||    ||        ||||||| |||||||| ||||||||||||||||||||||| || || |||||| ||||||| |||||  || | |||||||| ||||| || ||||||||| |||
gtaaggtcttcggtatatggtatgttctatgaatgagattccagtcagtcaatttagcttatcgcagtgggcaagtgtcctttttctgatgtcgt-tctttatggcagttatgaaacgctgttaactgaaggtttctgacgaatagaatgctgaactctccagGTCCTTAACATTCCCACCAAGATTAACAAGGGTACTGTCGAGATTATCGCCCCTGTCGAGCTTGTCCACAAGGGTGACAAGGTCGGATCGTCCGAGGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32850235|gb|CD989916.1|CD989916
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGT
EST: gi|32836722|gb|CD976400.1|CD976400
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTA
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTA
EST: gi|5499111|gb|AI854978.1|AI854978
EST:     TGCCCCCTGGCAACACTGAGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GNGCTTAACATCCCCACCAAGATTAACAAGG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGG
EST: gi|211522833|gb|FL225757.1|FL225757
EST:     GCCCCCTGGCAACACTGGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: GCCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|9794598|gb|BE552906.1|BE552906
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211525847|gb|FL225778.1|FL225778
EST:     GCCCCCTGGCAACACTGGGGCTG-ATCCGTCCCAGACCTCTTTCTTCCAG                         GTGGCTTA-CATCCCCACCCAGAATTA-CAAGGGTACCGGTGGAAAATATC
genomic: GCCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTG-CTTAACATCCCCACCAAGA-TTAACAAGGGTACCG-TGGAAATTATC
EST: gi|32912223|gb|CF017035.1|CF017035
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|5555356|gb|AI881307.1|AI881307
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|32912616|gb|CF017428.1|CF017428
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGT
EST: gi|32912218|gb|CF017030.1|CF017030
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|32910537|gb|CF015349.1|CF015349
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|29129795|gb|CB380499.1|CB380499
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|21891518|gb|BQ744731.1|BQ744731
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGG
EST: gi|211525840|gb|FL225771.1|FL225771
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|21331643|gb|BQ487024.1|BQ487024
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211522840|gb|FL225764.1|FL225764
EST:     TGCCCCCTGGCAACACTGAGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|91051234|gb|EB161652.1|EB161652
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|40334717|gb|CK368787.1|CK368787
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|84980456|gb|DW530805.1|DW530805
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|20803417|gb|BQ294467.1|BQ294467
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211531850|gb|FL225809.1|FL225809
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|32836554|gb|CD976232.1|CD976232
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGT
EST: gi|32909304|gb|CF014116.1|CF014116
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGG
EST: gi|32910634|gb|CF015446.1|CF015446
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACAT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACAT
EST: gi|21987270|gb|BQ778798.1|BQ778798
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|33093775|gb|CF053769.1|CF053769
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGT
EST: gi|211302171|gb|FL225736.1|FL225736
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGG
EST: gi|211525852|gb|FL225783.1|FL225783
EST:     TGCCCCCTGGCA-CACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAAACA-GGGTACCGTGGAAAT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAA-CAAGGGTACCGTGGAAAT
EST: gi|211522842|gb|FL225766.1|FL225766
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGT
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGT
EST: gi|5567030|gb|AI881941.1|AI881941
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGNGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|22542892|gb|BU093330.1|BU093330
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|22819224|gb|BU499314.1|BU499314
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGG
EST: gi|32856189|gb|CD995870.1|CD995870
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|50330131|gb|CO525257.1|CO525257
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211531855|gb|FL225814.1|FL225814
EST:     TGCCCCCTGGCA-CACTGGGCTGGATCCGTCCCAGACCTCTTTCTTACAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACGGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211519821|gb|FL225743.1|FL225743
EST:     CCCCCTGGCAACACTGGGGCTGGATCCGTCCCAGACCTCTTTTCTTC-AG                         GTGCTTAACATCCCCACCAAGATTAACNAGGGTACCCGTGGAAATTATCA
genomic: CCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTT-CTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACC-GTGGAAATTATCA
EST: gi|60395166|gb|DN228035.1|DN228035
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|193503599|gb|AM937788.1|AM937788
EST:     GCCCCCTGACAACACTGGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATGCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: GCCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211534849|gb|FL225820.1|FL225820
EST:     GCCCCCTGGCAACACTGGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACCAGGGTACCGTGGAAATTATCACC
genomic: GCCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211525851|gb|FL225782.1|FL225782
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|28987533|gb|CB351681.1|CB351681
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GGGCTTAACAATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCAC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACA-TCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCAC
EST: gi|60340405|gb|DN207378.1|DN207378
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAAATATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211519833|gb|FL225755.1|FL225755
EST:     GCCCCCTGGCAACACTGGGCTGGATCCCGTCC-AGAACTCTTTCTTTCAG                         GTGCTTAACATCCCCACCAAGATTAACAGGGGTACGGTGGAAATTTATCAC
genomic: GCCCCCTGGCAACACTGGGCTGGATCC-GTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATT-ATCAC
EST: gi|211519830|gb|FL225752.1|FL225752
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCT-AACATCCCCAC-AAGAATTAACA-GGGTACCGTGGAAAT-ATCAC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGA-TTAACAAGGGTACCGTGGAAATTATCAC
EST: gi|166652000|gb|EG318453.1|EG318453
EST:     TG-CCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCG
EST: gi|69351552|gb|DR452173.1|DR452173
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|33091599|gb|CF051593.1|CF051593
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACTGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211519826|gb|FL225748.1|FL225748
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATC
EST: gi|32850326|gb|CD990007.1|CD990007
EST:     TGCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATCGAACAAGGGTA
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATT-AACAAGGGTA
EST: gi|211525846|gb|FL225777.1|FL225777
EST:     GCCCCCTGGCAA-ACTGGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACAAAGATTAACAGGGGTACCCGTGGAA-TTATCAC
genomic: GCCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACC-GTGGAAATTATCAC
EST: gi|91874085|gb|EB404042.1|EB404042
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|211522832|gb|FL225756.1|FL225756
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCCTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGG
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGG
EST: gi|13388319|gb|BG462271.1|BG462271
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGCGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|5566853|gb|AI881764.1|AI881764
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|22543194|gb|BU093632.1|BU093632
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACC
EST: gi|211302173|gb|FL225738.1|FL225738
EST:     GCCCCCTGGCAACACTGGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAAGGTACCGTGGAAATTATCACC
genomic: GCCCCCTGGCAACACTGGG-CTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
EST: gi|76019567|gb|DT946737.1|DT946737
EST:     TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAG                         GTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC
genomic: TGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1069

GTGGGGGCTCCTGCTCGTGTTGGTCTGGTTGCTCCAGTTGATGTTGTTGTGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 878

GTGGGGGCTCCTGCTCGTGTTGGTCTGGTTGCTCCAGTTGATGTTGTTGTGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 898

GTGGGGGCTCCTGCTCGTGTTGGTCTGGTTGCTCCAGTTGATGTTGTTGTGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 574

GTGGGGGCTCCTGCTCGTGTTGGTCTGGTTGCTCCAGTTGATGTTGTTGTGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttgg ... tttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagctaaaatgcaagcacacaaaggcgcttttctcatttgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG
   agctaaa  putative branch site (score: 574)
                                             tttgttcc  putative PPT
      taaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaccttggaagcaacacctctgtgatacagctaaaatgcaagcacacaaaggcgcttttctcatttgtcatttgttccagGTGCTTAACATCCCCACCAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAGCTGATCAAGAAGGGTGAAAAGGTGGGCTCGTCCGAGTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG