Sequence
atgc intronic sequence ATGC exonic sequencegtgctagcgcaattggggagcctttttttttatcgtttccccgctgttttggttcaagagtttcgaatttgggatggtggtgtgatcttggttggcggctgctggtgtgtgcttcctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G066362_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g07720.4 (Oryza sativa), 3'ss of exon 2
gtgctagcgcaattggggagcctttttttttatcgtttcccc-gctgttttggttcaagagtttcgaatttgggatggtggtgtgatcttggttggcggctgctggtgtgtgcttcctgcgcta-gGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
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----------------------------------gtatcatcagctcagatcgttggcgaatttcggctttgatttttggtcgctgctgatatagatgcgaactaatttggg-----tgcgagaagGTGGACGCGTTTGTGGAAGGGGAGAGGGATTACACCAAGATCGAGGGCGACACGGGGCCGCTCGTCTACCCGGCCGGCTTCCTCTACGTTTACTCCGCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78111543|gb|DV529940.1|DV529940EST: ATACCAAGATCGACTGGGACGCCTACATGTCCCAG GTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
genomic: ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
EST:
gi|211401320|gb|FL428497.1|FL428497EST: ATACCAAGATCGACTGGGACGCCTACATGTCCCAG GTGGACGCTTTTCTGGAGGGGGANAGGGACTACACCAAGATCGAGGGAGAC
genomic: ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
EST:
gi|211146265|gb|FL418222.1|FL418222EST: ATACCAAGATCGACTGGGACGCCTACATGTCCCAG GTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
genomic: ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
EST:
gi|78090317|gb|DV518691.1|DV518691EST: ATACCAAGATCGACTGGGACGCCTACATGTCCCAG GTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAG
genomic: ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAG
EST:
gi|211043010|gb|FL421674.1|FL421674EST: ATACCAAGATCGACTGGGACGCCTACATGTCCCAG GTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
genomic: ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGAC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
35 (upstream exon),
49 (downstream exon)
Score:
126ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
Block sizes:
48 (upstream exon),
49 (downstream exon)
Score:
114ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
Block sizes:
42 (upstream exon),
49 (downstream exon)
Score:
129ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
Block sizes:
35 (upstream exon),
46 (downstream exon)
Score:
65ATACCAAGATCGACTGGGACGCCTACATGTCCCAGgtgctagcgc ... cctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggatggtggtgtgatcttggttggcggctgctggtgtgtgcttcctgcgctagGTGGACGCTTTTCTGGAGGGGGAGAGGGACTACACCAAGATCGAGGGAGACACAGGGCCATTGGTCTACCCGGCCGGATTCCTCTACGTCTACTCCGCCG
tgcttcct CT-rich tract