1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatactacagtagcatgcatgcatctcgcaatgatcatctattgtgattagtttccttttaatctatcttatggaaatggatctatatatattgtgtgtagGTGGACTTGGTCACCATGCTTGAGAAGGCGATCACCTATGTCAAGTTTCTCCAGCTGCAAGTGAAG
species | Zea mays |
transcript | GRMZM2G066057_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGAGAAGCTCAAGGTCCTGCAAGATCTCGTGCCCAATGGCACCAAG GTGGACTTGGTCACCATGCTTGAGAAGGCGATCACCTATGTCAAGTTTCTC
genomic: TCGCCGAGAAGCTCAAGGTCCTGCAAGATCTCGTGCCCAATGGCACCAAGgtacatacta ... ttgtgtgtagGTGGACTTGGTCACCATGCTTGAGAAGGCGATCACCTATGTCAAGTTTCTC
attagtttccttttaatctatcttatggaaatggatctatatatattgtgtgtagGTGGACTTGGTCACCATGCTTGAGAAGGCGATCACCTATGTCAAGTTTCTCCAGCTGCAAGTGAAG
ttttaat putative branch site (score: 6)
ttttaatctatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatactacagtagcatgcatgcatctcgcaatgatcatctattgtgattagtttccttttaatctatcttatggaaatggatctatatatattgtgtgtagGTGGACTTGGTCACCATGCTTGAGAAGGCGATCACCTATGTCAAGTTTCTCCAGCTGCAAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC