Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaacgatctctgcccctcctgtattcagtggaatcaatcgaattctgaggcaacatttttgttagGTCGTCGGCGTTGTGGGTGGTGCCCTGGCCATCTCGGAGCTGATGCAGGCGCAGTATAAGCACACGCTCGCGGGCCCCTCACTCAAGGTGGATCCCCACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G065958_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g08660.1 (Oryza sativa), 3'ss of exon 1
--gtaagtaac--gatctctgcccc-tcctgtattcagtggaatcaatcgaattctgaggcaacatt-------tttgttagGTCGTCGGCGTTGTGGGTGGTGCCCTGGCCATCTCGGAGCTGATGCAGGCGCAGTATAAGCACACGCTCGCGGGCCCCTCACTCAAGGTGGATCCCCACA
||| || |||| ||| ||| | | || |||| | |||| | | || ||| ||| || || | |||||||| || |||| |||||||||||||||| || |||||| ||||||| ||||| ||| || || ||||||||||||| |||||
gtataaactactcagtctcctcccaatccccctcgctttcttctccttcgattgctgatgagaatttggtttggcttggcagGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcccctcctgtattcagtggaatcaatcgaattctgaggcaacatttttgttagGTCGTCGGCGTTGTGGGTGGTGCCCTGGCCATCTCGGAGCTGATGCAGGCGCAGTATAAGCACACGCTCGCGGGCCCCTCACTCAAGGTGGATCCCCACA
tttttgtt CT-rich tract
atttttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaacgatctctgcccctcctgtattcagtggaatcaatcgaattctgaggcaacatttttgttagGTCGTCGGCGTTGTGGGTGGTGCCCTGGCCATCTCGGAGCTGATGCAGGCGCAGTATAAGCACACGCTCGCGGGCCCCTCACTCAAGGTGGATCCCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA