1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagtgacatctacatcaggctctggcctggccaaaggccgtggcgcccgtggcttgacgcacgtttccgtgtttgggtggtttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCGGATCAGCCAAGGGCCTCGCCTACCTGCATGAAGACTGTGAGTGAGCATC
species | Zea mays |
transcript | GRMZM2G065214_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACG GAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCGEST: gi|149112996|gb|EE191482.2|EE191482
genomic: GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACGgtcagtgaca ... ttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG
EST: GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACG GAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG
genomic: GCTCGTCTACCAGTTCGTGCCCAACAAGACCCTCGAGTTCCACCTCCACGgtcagtgaca ... ttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCG
gccgtggcgcccgtggcttgacgcacgtttccgtgtttgggtggtttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCGGATCAGCCAAGGGCCTCGCCTACCTGCATGAAGACTGTGAGTGAGCATC
gcttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgacatctacatcaggctctggcctggccaaaggccgtggcgcccgtggcttgacgcacgtttccgtgtttgggtggtttgcacgcagGAAAAGGGCAGCCGGTGATGGAGTGGTCGACGAGGCTGCGCATTGCGCTCGGATCAGCCAAGGGCCTCGCCTACCTGCATGAAGACTGTGAGTGAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA