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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttagaatcacactaatggggccaaactttttaagaaaaatggtgagttatatgagtaattttgtcaaagctgattctttttatgtgattattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG

Basic information

species Zea mays
transcript GRMZM2G065105_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32910504|gb|CF015316.1|CF015316
EST:     CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAG                         ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
genomic: CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
EST: gi|211162284|gb|FL231527.1|FL231527
EST:     CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAG                         ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
genomic: CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
EST: gi|211163879|gb|FL231538.1|FL231538
EST:     CGCAGCAGGCAGCTTGAAGAGCTTACAGATAAGATGCGAGACTGCAAGAG                         ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACT
genomic: CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACT
EST: gi|211162277|gb|FL231520.1|FL231520
EST:     CGCAGCAGGCAGCTTGAAGAGCTTACAGATWAGATGCGAGACTGCAAGAG                         ACTCATCAAAGACTTCGAGCGAGTTWGCAAAGCTGAGGCTGAGCATACTGA
genomic: CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
EST: gi|211357112|gb|FL231558.1|FL231558
EST:     CGCAGCAGGCAGCTTGAAGAGCTTACAGATAAGATGCGAGACTGCAAGAG                         ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
genomic: CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
EST: gi|211357114|gb|FL231560.1|FL231560
EST:     GCAGCAGGCAGCTTGAAGAGCTTACAGATAAGATGCGAGACYTGCAAGAK                         ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTG
genomic: GCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGAC-TGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTG
EST: gi|71761831|gb|DR959768.1|DR959768
EST:     CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAG                         ACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA
genomic: CGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGgttgctcaat ... tattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttatatgagtaattttgtcaaagctgattctttttatgtgattattatccagACTCATCAAAGACTTCGAGCGAGTTAGCAAAGCTGAGGCTGAGCATACTGATCCAGCAACAGCAAAAATGTTGCATGACAGAAAGCAGTCGATG
                        agctgat  putative branch site (score: 4)
                             attctttttatgtgat  TA-rich tract